STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_1683PFAM: inner-membrane translocator; KEGG: bpm:BURPS1710b_2071 ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (329 aa)    
Predicted Functional Partners:
rbsA2
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 0.993
Rxyl_1681
KEGG: sco:SCO0808 putative secreted solute-binding lipoprotein.
 0.982
Rxyl_1682
PFAM: inner-membrane translocator; KEGG: pmu:PM1378 ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 
0.962
Rxyl_0948
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0206 Periplasmic sugar-binding proteins.
 
 0.874
Rxyl_3001
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ctc:CTC00907 D-ribose-binding periplasmic protein.
 
 0.869
Rxyl_2603
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: mlo:mll3407 ribose ABC transporter, periplasmic binding protein.
 
 0.867
rbsA1
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.862
rbsA3
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.861
Rxyl_0398
KEGG: atc:AGR_L_993 periplasmic sugar binding protein homolog.
 
 
 0.854
Rxyl_0397
PFAM: ABC transporter related; SMART: ATPase; KEGG: atc:AGR_L_992 high affinity ribose transport protein.
 
 0.846
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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