STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
allBDihydroorotase, multifunctional complex type; Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring; Belongs to the metallo-dependent hydrolases superfamily. Allantoinase family. (454 aa)    
Predicted Functional Partners:
Rxyl_2847
PFAM: aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: pfu:PF0599 aspartate carbamoyltransferase catalytic chain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
 
 0.996
pyrB
TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: ccr:CC2443 aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
 
 0.992
carB
TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase-like, ATP-grasp protein of unknown function DUF201 Carbamoyl-phosphate synthase L chain, ATP-binding Carbamoyl-phosphate synthetase large chain, oligomerisation Carbamoyl-phosphate synthetase large chain-like MGS-like; KEGG: afu:AF1274 carbamoyl-phosphate synthase large chain.
 
 0.974
carA
TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I Carbamoyl-phosphate synthase, small chain; KEGG: plt:Plut_0156 carbamoyl-phosphate synthase small subunit; Belongs to the CarA family.
  
 0.971
Rxyl_2841
KEGG: dra:DR1158 hypothetical protein.
 
  
 0.968
Rxyl_0221
Amidase, hydantoinase/carbamoylase; KEGG: sai:Saci_2132 N-carbamoyl-L-amino acid amidohydrolase; TIGRFAM: Amidase, hydantoinase/carbamoylase; PFAM: peptidase M20.
 
 
 0.943
Rxyl_1854
Amidase, hydantoinase/carbamoylase; KEGG: gka:GK3252 N-carbamoyl-L-amino acid amidohydrolase; TIGRFAM: Amidase, hydantoinase/carbamoylase; PFAM: peptidase M20 peptidase dimerisation.
 
 
 0.941
Rxyl_2745
Amidase, hydantoinase/carbamoylase; KEGG: ret:RHE_CH00350 probable N-carbamoyl-L-amino acid amidohydrolase protein; TIGRFAM: Amidase, hydantoinase/carbamoylase; PFAM: peptidase M20 peptidase dimerisation.
 
 
 0.941
Rxyl_0356
Hypothetical protein.
    
  0.902
Rxyl_2843
Urate oxidase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
 
  
 0.901
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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