STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_1484Putative transcriptional regulator (DNA binding protein). (108 aa)    
Predicted Functional Partners:
repA-2
Replication initiation protein CMGI-3 (GI family Tn4371).
 
    0.920
Rmet_1483
Conserved hypothetical protein.
 
    0.908
traF-2
Plasmid conjugal transfer transmembrane protein.
 
    0.863
Rmet_1487
Conserved hypothetical protein.
 
    0.862
parG-3
Regulator of plasmid copy number (ribbon-helix-helix).
 
     0.856
virD2-2
Relaxase type IV secretory pathway VirD2.
 
     0.827
Rmet_1482
Lipoprotein.
 
     0.797
Rmet_1340
DNA-binding helix-turn-helix domain-containing protein (CopG-like) (CMGI-2).
 
   
 0.781
Rmet_1549
DNA-binding helix-turn-helix domain-containing protein (CopG-like) (belongs to the transfer module of genomic island CMGI-3).
 
   
 0.781
virD2-3
Relaxase type IV secretory pathway VirD2.
 
    0.781
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.