STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_1549DNA-binding helix-turn-helix domain-containing protein (CopG-like) (belongs to the transfer module of genomic island CMGI-3). (154 aa)    
Predicted Functional Partners:
trbD-2
Putative conjugal transfer transmembrane protein.
 
     0.948
traG-2
Conjugal transfer protein.
 
     0.947
trbC-2
Type IV secretion system protein TrbC; Mating pair formation conjugal transfer TrbC transmembrane protein (module transfer of genomic island CMGI-3).
 
     0.947
trbJ-2
Mating pair formation protein.
 
     0.939
trbE-2
ATPase involved in conjugal transfer CagE TrbE VirB component of type IV transporter system (belongs to transfer module of genomic island CMGI-3).
 
     0.934
trbL-2
Conjugal transfer transmembrane protein.
 
     0.933
trbI-2
Type IV secretion system transmembrane protein (conjugal transfer:mating pair formation).
 
     0.926
Rmet_1560
Conserved hypothetical protein; (protein belongs to CMGI-3).
 
     0.926
trbG-2
Conjugal transfer protein precursor.
 
     0.925
trbF-2
Conjugal transfer precursor protein.
 
     0.924
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.