Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rmet_1560 | traG-2 | Rmet_1560 | Rmet_1548 | Conserved hypothetical protein; (protein belongs to CMGI-3). | Conjugal transfer protein. | 0.911 |
Rmet_1560 | trbC-2 | Rmet_1560 | Rmet_1551 | Conserved hypothetical protein; (protein belongs to CMGI-3). | Type IV secretion system protein TrbC; Mating pair formation conjugal transfer TrbC transmembrane protein (module transfer of genomic island CMGI-3). | 0.919 |
Rmet_1560 | trbD-2 | Rmet_1560 | Rmet_1552 | Conserved hypothetical protein; (protein belongs to CMGI-3). | Putative conjugal transfer transmembrane protein. | 0.921 |
Rmet_1560 | trbE-2 | Rmet_1560 | Rmet_1553 | Conserved hypothetical protein; (protein belongs to CMGI-3). | ATPase involved in conjugal transfer CagE TrbE VirB component of type IV transporter system (belongs to transfer module of genomic island CMGI-3). | 0.920 |
Rmet_1560 | trbF-2 | Rmet_1560 | Rmet_1557 | Conserved hypothetical protein; (protein belongs to CMGI-3). | Conjugal transfer precursor protein. | 0.942 |
Rmet_1560 | trbG | Rmet_1560 | Rmet_1349 | Conserved hypothetical protein; (protein belongs to CMGI-3). | Conjugal transfer protein TrbG/VirB9/CagX precursor putative exported protein(protein belongs to CMGI-2). | 0.764 |
Rmet_1560 | trbG-2 | Rmet_1560 | Rmet_1558 | Conserved hypothetical protein; (protein belongs to CMGI-3). | Conjugal transfer protein precursor. | 0.944 |
Rmet_1560 | trbI-2 | Rmet_1560 | Rmet_1559 | Conserved hypothetical protein; (protein belongs to CMGI-3). | Type IV secretion system transmembrane protein (conjugal transfer:mating pair formation). | 0.948 |
Rmet_1560 | trbJ-2 | Rmet_1560 | Rmet_1554 | Conserved hypothetical protein; (protein belongs to CMGI-3). | Mating pair formation protein. | 0.936 |
Rmet_1560 | trbL-2 | Rmet_1560 | Rmet_1556 | Conserved hypothetical protein; (protein belongs to CMGI-3). | Conjugal transfer transmembrane protein. | 0.941 |
traG-2 | Rmet_1560 | Rmet_1548 | Rmet_1560 | Conjugal transfer protein. | Conserved hypothetical protein; (protein belongs to CMGI-3). | 0.911 |
traG-2 | trbC-2 | Rmet_1548 | Rmet_1551 | Conjugal transfer protein. | Type IV secretion system protein TrbC; Mating pair formation conjugal transfer TrbC transmembrane protein (module transfer of genomic island CMGI-3). | 0.959 |
traG-2 | trbD-2 | Rmet_1548 | Rmet_1552 | Conjugal transfer protein. | Putative conjugal transfer transmembrane protein. | 0.955 |
traG-2 | trbE-2 | Rmet_1548 | Rmet_1553 | Conjugal transfer protein. | ATPase involved in conjugal transfer CagE TrbE VirB component of type IV transporter system (belongs to transfer module of genomic island CMGI-3). | 0.962 |
traG-2 | trbF-2 | Rmet_1548 | Rmet_1557 | Conjugal transfer protein. | Conjugal transfer precursor protein. | 0.935 |
traG-2 | trbG | Rmet_1548 | Rmet_1349 | Conjugal transfer protein. | Conjugal transfer protein TrbG/VirB9/CagX precursor putative exported protein(protein belongs to CMGI-2). | 0.839 |
traG-2 | trbG-2 | Rmet_1548 | Rmet_1558 | Conjugal transfer protein. | Conjugal transfer protein precursor. | 0.946 |
traG-2 | trbI-2 | Rmet_1548 | Rmet_1559 | Conjugal transfer protein. | Type IV secretion system transmembrane protein (conjugal transfer:mating pair formation). | 0.954 |
traG-2 | trbJ-2 | Rmet_1548 | Rmet_1554 | Conjugal transfer protein. | Mating pair formation protein. | 0.942 |
traG-2 | trbL-2 | Rmet_1548 | Rmet_1556 | Conjugal transfer protein. | Conjugal transfer transmembrane protein. | 0.942 |
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