Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Bxe_A0747 | Bxe_A2382 | Bxe_A0747 | Bxe_A2382 | Protein of unknown function UPF0079. | Aminotransferase. | 0.417 |
Bxe_A0747 | Bxe_A3891 | Bxe_A0747 | Bxe_A3891 | Protein of unknown function UPF0079. | Aminotransferase. | 0.417 |
Bxe_A0747 | Bxe_B0373 | Bxe_A0747 | Bxe_B0373 | Protein of unknown function UPF0079. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.818 |
Bxe_A0747 | ddl | Bxe_A0747 | Bxe_A0488 | Protein of unknown function UPF0079. | D-alanine--D-alanine ligase; Cell wall formation. | 0.607 |
Bxe_A2382 | Bxe_A0747 | Bxe_A2382 | Bxe_A0747 | Aminotransferase. | Protein of unknown function UPF0079. | 0.417 |
Bxe_A2382 | Bxe_A4217 | Bxe_A2382 | Bxe_A4217 | Aminotransferase. | Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase. | 0.470 |
Bxe_A2382 | Bxe_B0373 | Bxe_A2382 | Bxe_B0373 | Aminotransferase. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.817 |
Bxe_A2382 | Bxe_B3001 | Bxe_A2382 | Bxe_B3001 | Aminotransferase. | Serine--glyoxylate transaminase. | 0.926 |
Bxe_A2382 | ddl | Bxe_A2382 | Bxe_A0488 | Aminotransferase. | D-alanine--D-alanine ligase; Cell wall formation. | 0.478 |
Bxe_A2382 | murF | Bxe_A2382 | Bxe_A0482 | Aminotransferase. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.470 |
Bxe_A3262 | Bxe_B0373 | Bxe_A3262 | Bxe_B0373 | Nicotinate-nucleotide adenylyltransferase; Belongs to the NadD family. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.806 |
Bxe_A3891 | Bxe_A0747 | Bxe_A3891 | Bxe_A0747 | Aminotransferase. | Protein of unknown function UPF0079. | 0.417 |
Bxe_A3891 | Bxe_A4217 | Bxe_A3891 | Bxe_A4217 | Aminotransferase. | Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase. | 0.448 |
Bxe_A3891 | Bxe_B0373 | Bxe_A3891 | Bxe_B0373 | Aminotransferase. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.817 |
Bxe_A3891 | Bxe_B3001 | Bxe_A3891 | Bxe_B3001 | Aminotransferase. | Serine--glyoxylate transaminase. | 0.926 |
Bxe_A3891 | ddl | Bxe_A3891 | Bxe_A0488 | Aminotransferase. | D-alanine--D-alanine ligase; Cell wall formation. | 0.478 |
Bxe_A3891 | murF | Bxe_A3891 | Bxe_A0482 | Aminotransferase. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.470 |
Bxe_A4217 | Bxe_A2382 | Bxe_A4217 | Bxe_A2382 | Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase. | Aminotransferase. | 0.470 |
Bxe_A4217 | Bxe_A3891 | Bxe_A4217 | Bxe_A3891 | Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase. | Aminotransferase. | 0.448 |
Bxe_A4217 | Bxe_B0373 | Bxe_A4217 | Bxe_B0373 | Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.847 |
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