STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaD3-oxoadipate enol-lactonase. (263 aa)    
Predicted Functional Partners:
pcaC
4-carboxymuconolactone decarboxylase; Protocatechuate pathway; Citation: Nucleic Acids Res. 32 (19), 5766- 5779(2004).
 
 0.996
Bxe_B1965
4-carboxymuconolactone decarboxylase.
  
 0.993
Bxe_B0976
Putative gamma carboxymuconolactone decarboxylase.
  
 0.992
catC
Muconolactone delta-isomerase; Citation: Annu Rev Microbiol. 50:553-90 (1996). J.Bacteriol. 179 (16), 5226-5231 (1997); Belongs to the muconolactone Delta-isomerase family.
 
 
 0.976
pcaB
3-carboxy-cis,cis-muconate cycloisomerase; Protocatechuate pathway; Citation: Proc. Natl. Acad. Sci. U.S.A. 101 (39), 14246-14251 (2004).
  
 0.972
pcaJ
3-oxoadipate CoA-transferase beta subunit.
    
 0.971
pcaI
3-oxoadipate CoA-transferase alpha subunit.
    
 0.970
Bxe_B1143
Putative membrane protein.
     
  0.953
Bxe_A2370
Putative carboxymuconolactone decarboxylase.
 
  
 0.929
Bxe_A4238
3-oxoadipate enol-lactonase.
  
  
 
0.921
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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