STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_B0976Putative gamma carboxymuconolactone decarboxylase. (131 aa)    
Predicted Functional Partners:
pcaD
3-oxoadipate enol-lactonase.
  
 0.992
Bxe_B0595
3-oxoadipate enol-lactonase.
  
 0.991
Bxe_A4238
3-oxoadipate enol-lactonase.
  
 0.990
pcaB
3-carboxy-cis,cis-muconate cycloisomerase; Protocatechuate pathway; Citation: Proc. Natl. Acad. Sci. U.S.A. 101 (39), 14246-14251 (2004).
 
 
 0.964
Bxe_B1906
3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.936
Bxe_B2775
Protocatechuate 3,4-dioxygenase, beta subunit; Protocatechuate pathway; Citation: Biochem. Biophys. Res. Commun. 295 (4), 903-909 (2002).
 
 
 0.847
Bxe_B2776
Protocatechuate 3,4-dioxygenase, alpha subunit; Protocatechuate pathway; Citation: Biochem. Biophys. Res. Commun. 295 (4), 903-909 (2002).
 
 
 0.834
Bxe_A2370
Putative carboxymuconolactone decarboxylase.
 
  
 
0.830
Bxe_B0977
Major facilitator superfamily (MFS)metabolite/H+ symporter.
  
    0.792
Bxe_B1143
Putative membrane protein.
    
 0.779
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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