Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Bxe_A0016 | Bxe_A0230 | Bxe_A0016 | Bxe_A0230 | Oxidoreductase, GMC family. | Hypothetical protein. | 0.656 |
Bxe_A0016 | Bxe_A3468 | Bxe_A0016 | Bxe_A3468 | Oxidoreductase, GMC family. | Putative iron-sulphur rieske protein. | 0.801 |
Bxe_A0016 | Bxe_A4075 | Bxe_A0016 | Bxe_A4075 | Oxidoreductase, GMC family. | Putative cytochrome c precursor. | 0.952 |
Bxe_A0016 | Bxe_B0698 | Bxe_A0016 | Bxe_B0698 | Oxidoreductase, GMC family. | Putative glucose-methanol-choline oxidoreductase. | 0.915 |
Bxe_A0016 | Bxe_B2830 | Bxe_A0016 | Bxe_B2830 | Oxidoreductase, GMC family. | Putative osmotic adaptation-related protein. | 0.912 |
Bxe_A0016 | Bxe_C0407 | Bxe_A0016 | Bxe_C0407 | Oxidoreductase, GMC family. | Putative Rieske-type ring dioxygenase. | 0.801 |
Bxe_A0016 | Bxe_C1257 | Bxe_A0016 | Bxe_C1257 | Oxidoreductase, GMC family. | Hypothetical protein. | 0.921 |
Bxe_A0016 | betA | Bxe_A0016 | Bxe_B1592 | Oxidoreductase, GMC family. | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | 0.921 |
Bxe_A0016 | betB | Bxe_A0016 | Bxe_B1591 | Oxidoreductase, GMC family. | Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid. | 0.800 |
Bxe_A0016 | betI | Bxe_A0016 | Bxe_B1590 | Oxidoreductase, GMC family. | Transcriptional regulator, TetR family; Repressor involved in the biosynthesis of the osmoprotectant glycine betaine. It represses transcription of the choline transporter BetT and the genes of BetAB involved in the synthesis of glycine betaine (By similarity). | 0.407 |
Bxe_A0230 | Bxe_A0016 | Bxe_A0230 | Bxe_A0016 | Hypothetical protein. | Oxidoreductase, GMC family. | 0.656 |
Bxe_A0230 | Bxe_B0698 | Bxe_A0230 | Bxe_B0698 | Hypothetical protein. | Putative glucose-methanol-choline oxidoreductase. | 0.656 |
Bxe_A0230 | Bxe_C1257 | Bxe_A0230 | Bxe_C1257 | Hypothetical protein. | Hypothetical protein. | 0.944 |
Bxe_A0230 | betA | Bxe_A0230 | Bxe_B1592 | Hypothetical protein. | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | 0.697 |
Bxe_A3468 | Bxe_A0016 | Bxe_A3468 | Bxe_A0016 | Putative iron-sulphur rieske protein. | Oxidoreductase, GMC family. | 0.801 |
Bxe_A3468 | Bxe_B0698 | Bxe_A3468 | Bxe_B0698 | Putative iron-sulphur rieske protein. | Putative glucose-methanol-choline oxidoreductase. | 0.801 |
Bxe_A3468 | Bxe_B2830 | Bxe_A3468 | Bxe_B2830 | Putative iron-sulphur rieske protein. | Putative osmotic adaptation-related protein. | 0.850 |
Bxe_A3468 | betA | Bxe_A3468 | Bxe_B1592 | Putative iron-sulphur rieske protein. | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | 0.801 |
Bxe_A4075 | Bxe_A0016 | Bxe_A4075 | Bxe_A0016 | Putative cytochrome c precursor. | Oxidoreductase, GMC family. | 0.952 |
Bxe_A4075 | Bxe_B0698 | Bxe_A4075 | Bxe_B0698 | Putative cytochrome c precursor. | Putative glucose-methanol-choline oxidoreductase. | 0.952 |
page 1 of 4