STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_B2511Outer membrane porin, OmpC family. (396 aa)    
Predicted Functional Partners:
Bxe_B2512
Outer membrane porin, OmpC family.
 
  
 
0.782
Bxe_A4418
Putative thioredoxin protein.
  
 
   0.781
Bxe_B2841
Putative transmembrane protein.
  
     0.761
Bxe_A4411
Putative exported protein.
  
     0.753
Bxe_A2368
Putative inner membrane protein.
  
     0.752
Bxe_A1444
Putative exported lipoprotein.
  
     0.750
Bxe_A1565
Conserved hypothetical protein.
  
     0.729
Bxe_A1586
Putative lipoprotein.
  
     0.725
Bxe_A0984
Putative membrane protein.
  
     0.706
Bxe_A0889
Putative transglycosylase SLT domain lipoprotein.
  
     0.699
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.