Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Bxe_A0120 | Bxe_A1835 | CheW protein. | PAS/PAC sensor hybrid histidine kinase. | 0.995 |
Bxe_A0120 | Bxe_A2619 | CheW protein. | PAS/PAC sensor hybrid histidine kinase. | 0.995 |
Bxe_A0120 | Bxe_A3018 | CheW protein. | CheW protein. | 0.985 |
Bxe_A0120 | Bxe_A4534 | CheW protein. | PAS/PAC sensor hybrid histidine kinase. | 0.995 |
Bxe_A0120 | Bxe_B0221 | CheW protein. | GAF sensor hybrid histidine kinase. | 0.991 |
Bxe_A0120 | Bxe_B1216 | CheW protein. | Multi-sensor hybrid histidine kinase. | 0.991 |
Bxe_A0120 | Bxe_B1520 | CheW protein. | Signal transduction histidine kinase (STHK) with CheB and CheR activity; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.997 |
Bxe_A0120 | Bxe_B2984 | CheW protein. | Methyl-accepting chemotaxis sensory transducer, Pas/Pac sensor. | 0.995 |
Bxe_A0120 | Bxe_C0521 | CheW protein. | Multi sensor hybrid histidine kinase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.997 |
Bxe_A0120 | Bxe_C1277 | CheW protein. | PAS/PAC sensor hybrid histidine kinase. | 0.995 |
Bxe_A1835 | Bxe_A0120 | PAS/PAC sensor hybrid histidine kinase. | CheW protein. | 0.995 |
Bxe_A1835 | Bxe_A2619 | PAS/PAC sensor hybrid histidine kinase. | PAS/PAC sensor hybrid histidine kinase. | 0.999 |
Bxe_A1835 | Bxe_A3018 | PAS/PAC sensor hybrid histidine kinase. | CheW protein. | 0.999 |
Bxe_A1835 | Bxe_A4534 | PAS/PAC sensor hybrid histidine kinase. | PAS/PAC sensor hybrid histidine kinase. | 0.999 |
Bxe_A1835 | Bxe_B0221 | PAS/PAC sensor hybrid histidine kinase. | GAF sensor hybrid histidine kinase. | 0.999 |
Bxe_A1835 | Bxe_B1216 | PAS/PAC sensor hybrid histidine kinase. | Multi-sensor hybrid histidine kinase. | 0.999 |
Bxe_A1835 | Bxe_B1520 | PAS/PAC sensor hybrid histidine kinase. | Signal transduction histidine kinase (STHK) with CheB and CheR activity; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.999 |
Bxe_A1835 | Bxe_B2984 | PAS/PAC sensor hybrid histidine kinase. | Methyl-accepting chemotaxis sensory transducer, Pas/Pac sensor. | 0.997 |
Bxe_A1835 | Bxe_C0521 | PAS/PAC sensor hybrid histidine kinase. | Multi sensor hybrid histidine kinase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.999 |
Bxe_A1835 | Bxe_C1277 | PAS/PAC sensor hybrid histidine kinase. | PAS/PAC sensor hybrid histidine kinase. | 0.999 |
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