STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bxe_C0452Putative type IV secretion system protein VirB5/TraF. (235 aa)    
Predicted Functional Partners:
Bxe_C0451
Putative type IV secretion system protein VirB6/TraH.
   
 0.960
Bxe_C0450
Putative Type IV secretion system protein VirB4/TraE.
    
 0.871
Bxe_A1757
Putative type IV secretion system protein VirB6.
   
 0.833
Bxe_A2654
Putative type IV secretion system protein VirB6/TraH.
   
 0.833
Bxe_C0449
Putative type IV secretion system protein VirB3/TraD.
     
 0.800
Bxe_C0448
Putative type IV secretion system protein VirB2/TraC.
     
 0.780
Bxe_C0454
Putative type IV secretion system protein VirB9.
    
 0.697
Bxe_C0455
Putative type IV secretion system protein VirB10.
    
 0.694
Bxe_C0447
Putative type IV secretion system protein VirB1.
     
 0.677
Bxe_C0445
Hypothetical protein.
       0.634
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.