STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bphA1Biphenyl 2,3-dioxygenase alpha subunit (BphA1); Biphenyl pathway; Citation: J. Bacteriol. 174 (9), 2903-2912 (1992). (459 aa)    
Predicted Functional Partners:
bphA2
Biphenyl 2,3-dioxygenase small subunit (BphA2); The beta subunit may be responsible for the substrate specificity of the enzyme; Belongs to the bacterial ring-hydroxylating dioxygenase beta subunit family.
 
 0.999
Bxe_C0587
Rieske-type ring hydroxylating dioxygenase beta subunit; Citation: J. Bacteriol. 181:2675-2682(1999).
 
 0.966
Bxe_A3555
P-cumate dioxygenase small subunit (CmtAc); P-cumate pathway; Citation: J. Bacteriol. 178 (5), 1351-1362 (1996).
 
 0.938
ohbA
Rieske-type ring-hydroxylating dioxygenase, beta subunit; Citation: Appl Environ Microbiol. 1999May;65(5):2151-62.
 
 0.929
benB
Benzoate 1,2-dioxygenase, beta subunit; Citation: Annu Rev Microbiol. 1996;50:553-90.
 
 0.928
Bxe_B2751
Terephthalate 1,2-dioxygenase, beta subunit; Terephthalate degradation; Citation: Environ. Health Perspect. 103, 9-12(1995).
 
 0.919
bphB
Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (BphB); Biphenyl pathway; Citation: J. Bacteriol. 174 (9), 2903-2912 (1992); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.916
Bxe_C0942
Putative ring dioxygenase beta subunit.
 
 0.914
Bxe_B2347
Putative aromatic dioxygenase, beta subunit.
 
 0.908
Bxe_A1101
Aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 0.907
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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