STRINGSTRING
SMc03896 protein (Sinorhizobium meliloti) - STRING interaction network
"SMc03896" - Transcription regulator protein in Sinorhizobium meliloti
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMc03896Transcription regulator protein (184 aa)    
Predicted Functional Partners:
SMc03899
Hypothetical protein (83 aa)
       
  0.990
sinR
Transcription regulator HSL-dependent protein (245 aa)
   
     
  0.858
SMc00658
Transcription regulator protein (247 aa)
   
     
  0.836
SMc04032
Transcription regulator protein (260 aa)
   
     
  0.833
SMa1029
Transposase ISRM1 (276 aa)
              0.819
TRm1a
Transposase ISRM1 (130 aa)
              0.819
sinI
Autoinducer synthase (214 aa)
 
     
  0.760
SMc00714
1-acyl-SN-glycerol-3-phosphate acyltransferase (PLSC) protein (260 aa)
           
  0.604
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (178 aa)
           
  0.497
pyc
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second (1152 aa)
         
  0.495
Your Current Organism:
Sinorhizobium meliloti
NCBI taxonomy Id: 266834
Other names: Ensifer meliloti, Rhizobium meliloti, Rhizobium meliloti (megaplasmid pRME41B SYM), Rhizobium meliloti (plasmid pRmeGR4b), Rhizobium meliloti plasmid pRmeGR4b, S. meliloti, S. meliloti 1021, Sinorhizobium meliloti, Sinorhizobium meliloti 1021
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