STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_0866Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: nfa:nfa3250 putative ferric uptake regulator; Belongs to the Fur family. (154 aa)    
Predicted Functional Partners:
Krad_0865
PFAM: Catalase domain protein; KEGG: nfa:nfa55390 putative catalase; Belongs to the catalase family.
    
 0.912
Krad_3370
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: rha:RHA1_ro01222 Fe(3+) uptake regulation protein; Belongs to the Fur family.
  
   
 0.721
Krad_0883
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: nca:Noca_4251 ferric-uptake regulator; Belongs to the Fur family.
  
     0.696
Krad_0867
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: aau:AAur_0234 oxidoreductase, short chain dehydrogenase/reductase family.
       0.608
Krad_2961
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: nca:Noca_3022 glutamate synthase (ferredoxin).
     
 0.518
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.502
Krad_3337
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sma:SAV5802 thiol-specific antioxidant protein.
  
  
 0.492
Krad_2918
Putative transcriptional regulator; KEGG: tfu:Tfu_1988 putative DNA-binding protein.
  
    0.475
sigA
RNA polymerase, sigma 70 subunit, RpoD family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.462
Krad_0868
PFAM: metallophosphoesterase; KEGG: sco:SCO4093 integral membrane protein.
     
 0.444
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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