STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1491Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: aau:AAur_0566 gluconolactonase. (327 aa)    
Predicted Functional Partners:
Krad_0597
TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; KEGG: dra:DR1910 thermoresistant gluconokinase.
    
 0.908
Krad_3895
PFAM: carbohydrate kinase FGGY; KEGG: gka:GK1941 gluconokinase; Belongs to the FGGY kinase family.
  
 
 0.906
Krad_3571
PFAM: aldo/keto reductase; KEGG: sus:Acid_2860 aldehyde reductase.
  
 
  0.904
Krad_1490
PFAM: protein of unknown function DUF664; KEGG: sco:SCO1340 hypothetical protein.
  
    0.774
Krad_1247
PFAM: glutathione peroxidase; KEGG: sco:SCO4444 putative glutathione peroxidase; Belongs to the glutathione peroxidase family.
 
    0.673
Krad_2486
PFAM: type III effector Hrp-dependent outers; KEGG: rfr:Rfer_0445 type III effector Hrp-dependent outers.
 
     0.562
Krad_0582
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: reh:H16_A2758 altronate dehydratase.
 
     0.506
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
    0.485
Krad_2485
PFAM: class II aldolase/adducin family protein; KEGG: pde:Pden_3382 class II aldolase/adducin family protein.
 
     0.416
Krad_1489
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: AAA ATPase; DEAD-like helicases; KEGG: nca:Noca_2329 DEAD/H associated domain protein.
       0.403
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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