node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Krad_0757 | Krad_1787 | Krad_0757 | Krad_1787 | TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: sco:SCO4797 putative ATP-dependent DNA helicase II. | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: art:Arth_0906 excinuclease ABC, A subunit. | 0.608 |
Krad_0757 | Krad_3247 | Krad_0757 | Krad_3247 | TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: sco:SCO4797 putative ATP-dependent DNA helicase II. | KEGG: nca:Noca_3128 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Excinuclease ABC C subunit domain protein; Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease. | 0.642 |
Krad_0757 | recA | Krad_0757 | Krad_1492 | TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: sco:SCO4797 putative ATP-dependent DNA helicase II. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.814 |
Krad_0757 | uvrA | Krad_0757 | Krad_2940 | TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: sco:SCO4797 putative ATP-dependent DNA helicase II. | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.649 |
Krad_0757 | uvrB | Krad_0757 | Krad_2942 | TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: sco:SCO4797 putative ATP-dependent DNA helicase II. | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.923 |
Krad_0757 | uvrC | Krad_0757 | Krad_2935 | TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: sco:SCO4797 putative ATP-dependent DNA helicase II. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.799 |
Krad_1787 | Krad_0757 | Krad_1787 | Krad_0757 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: art:Arth_0906 excinuclease ABC, A subunit. | TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: sco:SCO4797 putative ATP-dependent DNA helicase II. | 0.608 |
Krad_1787 | Krad_1788 | Krad_1787 | Krad_1788 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: art:Arth_0906 excinuclease ABC, A subunit. | PFAM: protein of unknown function DUF81; KEGG: aau:AAur_1554 putative integral membrane protein. | 0.639 |
Krad_1787 | Krad_2961 | Krad_1787 | Krad_2961 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: art:Arth_0906 excinuclease ABC, A subunit. | PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: nca:Noca_3022 glutamate synthase (ferredoxin). | 0.554 |
Krad_1787 | Krad_3147 | Krad_1787 | Krad_3147 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: art:Arth_0906 excinuclease ABC, A subunit. | TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: sco:SCO1780 putative DNA repair protein. | 0.524 |
Krad_1787 | Krad_3247 | Krad_1787 | Krad_3247 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: art:Arth_0906 excinuclease ABC, A subunit. | KEGG: nca:Noca_3128 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Excinuclease ABC C subunit domain protein; Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease. | 0.567 |
Krad_1787 | mfd | Krad_1787 | Krad_1067 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: art:Arth_0906 excinuclease ABC, A subunit. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.799 |
Krad_1787 | recA | Krad_1787 | Krad_1492 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: art:Arth_0906 excinuclease ABC, A subunit. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.526 |
Krad_1787 | uvrA | Krad_1787 | Krad_2940 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: art:Arth_0906 excinuclease ABC, A subunit. | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.908 |
Krad_1787 | uvrB | Krad_1787 | Krad_2942 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: art:Arth_0906 excinuclease ABC, A subunit. | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.984 |
Krad_1787 | uvrC | Krad_1787 | Krad_2935 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: art:Arth_0906 excinuclease ABC, A subunit. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.822 |
Krad_1788 | Krad_1787 | Krad_1788 | Krad_1787 | PFAM: protein of unknown function DUF81; KEGG: aau:AAur_1554 putative integral membrane protein. | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: art:Arth_0906 excinuclease ABC, A subunit. | 0.639 |
Krad_2961 | Krad_1787 | Krad_2961 | Krad_1787 | PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: nca:Noca_3022 glutamate synthase (ferredoxin). | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: art:Arth_0906 excinuclease ABC, A subunit. | 0.554 |
Krad_2961 | recA | Krad_2961 | Krad_1492 | PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: nca:Noca_3022 glutamate synthase (ferredoxin). | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.737 |
Krad_2961 | uvrA | Krad_2961 | Krad_2940 | PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: nca:Noca_3022 glutamate synthase (ferredoxin). | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.554 |