node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Krad_0002 | Krad_0653 | Krad_0002 | Krad_0653 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PFAM: ATP dependent DNA ligase; KEGG: rha:RHA1_ro05107 possible DNA ligase (ATP), C-terminal. | 0.835 |
Krad_0002 | Krad_1013 | Krad_0002 | Krad_1013 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Non-specific serine/threonine protein kinase; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: rha:RHA1_ro01559 probable helicase. | 0.801 |
Krad_0002 | Krad_1179 | Krad_0002 | Krad_1179 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: aau:AAur_2736 putative ATP-dependent DNA helicase (UvrD/REP). | 0.962 |
Krad_0002 | Krad_1504 | Krad_0002 | Krad_1504 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | SMART: helicase c2; DEAD-like helicases; KEGG: art:Arth_1467 helicase C2. | 0.664 |
Krad_0002 | Krad_1769 | Krad_0002 | Krad_1769 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; KEGG: aau:AAur_0002 DNA polymerase III, beta subunit. | 0.922 |
Krad_0002 | Krad_1887 | Krad_0002 | Krad_1887 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; KEGG: sco:SCO1622 putative 5'-3' exonuclease. | 0.852 |
Krad_0002 | Krad_2961 | Krad_0002 | Krad_2961 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: nca:Noca_3022 glutamate synthase (ferredoxin). | 0.436 |
Krad_0002 | recA | Krad_0002 | Krad_1492 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.737 |
Krad_0653 | Krad_0002 | Krad_0653 | Krad_0002 | PFAM: ATP dependent DNA ligase; KEGG: rha:RHA1_ro05107 possible DNA ligase (ATP), C-terminal. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.835 |
Krad_0653 | Krad_1013 | Krad_0653 | Krad_1013 | PFAM: ATP dependent DNA ligase; KEGG: rha:RHA1_ro05107 possible DNA ligase (ATP), C-terminal. | Non-specific serine/threonine protein kinase; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: rha:RHA1_ro01559 probable helicase. | 0.462 |
Krad_0653 | Krad_1179 | Krad_0653 | Krad_1179 | PFAM: ATP dependent DNA ligase; KEGG: rha:RHA1_ro05107 possible DNA ligase (ATP), C-terminal. | PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: aau:AAur_2736 putative ATP-dependent DNA helicase (UvrD/REP). | 0.430 |
Krad_0653 | Krad_1504 | Krad_0653 | Krad_1504 | PFAM: ATP dependent DNA ligase; KEGG: rha:RHA1_ro05107 possible DNA ligase (ATP), C-terminal. | SMART: helicase c2; DEAD-like helicases; KEGG: art:Arth_1467 helicase C2. | 0.500 |
Krad_0653 | Krad_1769 | Krad_0653 | Krad_1769 | PFAM: ATP dependent DNA ligase; KEGG: rha:RHA1_ro05107 possible DNA ligase (ATP), C-terminal. | TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; KEGG: aau:AAur_0002 DNA polymerase III, beta subunit. | 0.835 |
Krad_0653 | Krad_1887 | Krad_0653 | Krad_1887 | PFAM: ATP dependent DNA ligase; KEGG: rha:RHA1_ro05107 possible DNA ligase (ATP), C-terminal. | PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; KEGG: sco:SCO1622 putative 5'-3' exonuclease. | 0.740 |
Krad_0653 | recA | Krad_0653 | Krad_1492 | PFAM: ATP dependent DNA ligase; KEGG: rha:RHA1_ro05107 possible DNA ligase (ATP), C-terminal. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.535 |
Krad_0868 | Krad_1013 | Krad_0868 | Krad_1013 | PFAM: metallophosphoesterase; KEGG: sco:SCO4093 integral membrane protein. | Non-specific serine/threonine protein kinase; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: rha:RHA1_ro01559 probable helicase. | 0.425 |
Krad_0868 | Krad_1179 | Krad_0868 | Krad_1179 | PFAM: metallophosphoesterase; KEGG: sco:SCO4093 integral membrane protein. | PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: aau:AAur_2736 putative ATP-dependent DNA helicase (UvrD/REP). | 0.927 |
Krad_0868 | Krad_1504 | Krad_0868 | Krad_1504 | PFAM: metallophosphoesterase; KEGG: sco:SCO4093 integral membrane protein. | SMART: helicase c2; DEAD-like helicases; KEGG: art:Arth_1467 helicase C2. | 0.717 |
Krad_0868 | Krad_1887 | Krad_0868 | Krad_1887 | PFAM: metallophosphoesterase; KEGG: sco:SCO4093 integral membrane protein. | PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; KEGG: sco:SCO1622 putative 5'-3' exonuclease. | 0.761 |
Krad_0868 | recA | Krad_0868 | Krad_1492 | PFAM: metallophosphoesterase; KEGG: sco:SCO4093 integral membrane protein. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.606 |