STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3076PFAM: NUDIX hydrolase; KEGG: sth:STH2366 mutator MutT protein. (216 aa)    
Predicted Functional Partners:
Krad_3075
TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: nfa:nfa18050 putative glycosyl hydrolase.
       0.773
Krad_3073
TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sco:SCO7338 putative glycogen debranching enzyme; Belongs to the glycosyl hydrolase 13 family.
  
    0.684
Krad_3074
KEGG: fal:FRAAL2117 maltooligosyl trehalose synthase ((1, 4)-alpha-D-glucan 1-alpha-D-glucosylmutase); TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
       0.671
Krad_3077
PFAM: high-affinity nickel-transporter; KEGG: sma:SAV2333 high-affinity nickel-transport protein; Belongs to the NiCoT transporter (TC 2.A.52) family.
       0.578
Krad_3072
PFAM: ribonuclease BN; KEGG: nca:Noca_2354 ribonuclease BN.
  
    0.496
Krad_3071
PFAM: amidohydrolase 2; KEGG: aba:Acid345_0658 amidohydrolase 2.
       0.422
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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