STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_4187PFAM: peptidase S15; Acetyl xylan esterase; KEGG: ace:Acel_2045 acetyl xylan esterase. (328 aa)    
Predicted Functional Partners:
Krad_3413
PFAM: Acetyl xylan esterase; KEGG: art:Arth_3303 acetyl xylan esterase.
  
  
 
0.907
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
       0.763
Krad_4185
Hypothetical protein.
       0.757
Krad_4188
PFAM: extracellular solute-binding protein family 1; KEGG: aau:AAur_4081 putative extracellular solute-binding protein.
 
     0.627
Krad_4191
KEGG: nar:Saro_2411 twin-arginine translocation pathway signal.
       0.540
Krad_4190
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aau:AAur_3032 putative ABC-type sugar transport system, permease component.
       0.522
Krad_4193
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: aau:AAur_3801 putative mandelate racemase/muconate lactonizing enzyme.
       0.522
Krad_4189
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aau:AAur_3031 putative ABC-type sugar transport system, permease component.
       0.521
Krad_4192
5-carboxymethyl-2-hydroxymuconate Delta-isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sco:SCO2850 putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase.
       0.518
Krad_4184
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: art:Arth_2191 methyltransferase type 11.
       0.479
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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