STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_4280PFAM: Ferritin Dps family protein; KEGG: msm:MSMEG_3242 starvation-inducible DNA-binding protein or fine tangled pili major subunit; Belongs to the Dps family. (170 aa)    
Predicted Functional Partners:
Krad_4279
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: fal:FRAAL3168 ferric uptake regulation protein (ferric uptake regulator); Belongs to the Fur family.
  
  
 0.794
clpS
ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
   
 
 0.749
Krad_4281
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: msm:MSMEG_1297 hydroxydechloroatrazine ethylaminohydrolase.
       0.636
Krad_3337
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sma:SAV5802 thiol-specific antioxidant protein.
  
  
 0.539
Krad_1341
PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: nca:Noca_0636 flavodoxin/nitric oxide synthase.
  
  
 0.534
hpf
Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.512
Krad_4277
PFAM: regulatory protein MarR; KEGG: mul:MUL_0657 transcriptional regulator.
  
    0.509
Krad_4278
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: fal:FRAAL0353 putative multidrug resistance protein.
       0.509
Krad_4282
PFAM: HpcH/HpaI aldolase; KEGG: aau:AAur_3005 putative citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
       0.493
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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