STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_4495PFAM: NUDIX hydrolase; KEGG: art:Arth_4158 NUDIX hydrolase; Belongs to the Nudix hydrolase family. (158 aa)    
Predicted Functional Partners:
Krad_4496
KEGG: sma:SAV4300 hypothetical protein.
       0.819
Krad_4494
TIGRFAM: metal dependent phophohydrolase; tRNA adenylyltransferase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: sma:SAV4299 putative RNA nucleotidyltransferase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.675
Krad_1227
PFAM: lipolytic protein G-D-S-L family; KEGG: aau:AAur_2636 hypothetical protein.
 
     0.524
Krad_1175
PFAM: aminoglycoside phosphotransferase; KEGG: art:Arth_2755 aminoglycoside phosphotransferase.
 
     0.501
Krad_4493
KEGG: aau:AAur_1975 hypothetical protein.
 
     0.449
Krad_1131
PFAM: NUDIX hydrolase; KEGG: aau:AAur_1618 MutT/NUDIX family protein; Belongs to the Nudix hydrolase family.
      
 0.433
Krad_1817
KEGG: aau:AAur_2147 hypothetical protein.
  
     0.433
whiB-3
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.424
Krad_3697
KEGG: aau:AAur_2856 hypothetical protein.
  
     0.417
Krad_3844
KEGG: ace:Acel_0462 hypothetical protein.
  
     0.410
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
Server load: medium (76%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.