STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0050Putative fad linked oxidase oxidoreductase protein. (508 aa)    
Predicted Functional Partners:
RSc0049
Probable 3-carboxymuconate cyclase protein.
 
     0.878
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.581
RSc3178
Hypothetical atpase; protein.
  
    0.580
RSc0047
Putative cobalamin synthesis protein.
       0.533
RSc0048
Putative transcription regulator protein; Belongs to the Fur family.
       0.533
RSc1233
Probable permease transmembrane protein.
  
     0.481
RSc0051
Putative predicted sam-dependent methyltransferase protein.
       0.480
gltB
Probable glutamate synthase (large subunit) oxidoreductase protein.
     
 0.478
RSc0173
Putative prenyltransferase transmembrane protein; Belongs to the UbiA prenyltransferase family.
    
 0.448
RSp1228
Putative signal peptide protein.
  
     0.421
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.