STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rseBPutative sigma-e factor regulatory (negative regulator) transcription regulator protein. (369 aa)    
Predicted Functional Partners:
rseA
Putative transmembrane sigma-e factor negative regulatory transcription regulator protein.
 
 
 0.999
rpoE1
Probable rna polymerase sigma-e factor (sigma-24) transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.900
RSc1058
Probable periplasmic protease signal peptide protein; Belongs to the peptidase S1C family.
  
  
 0.624
RSc1059
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.593
RSc0053
Hypothetical protein of unknown function duf484.
  
     0.586
RSc2677
Putative type 4 fimbrial biogenesis pilw-related protein transmembrane.
  
     0.570
RSc2361
Probable rna polymerase sigma-e factor sigma-24 homolog transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.544
recO
Probable dna repair protein reco (recombination protein o); Involved in DNA repair and RecF pathway recombination.
 
    0.539
lepA
Probable ggtp-binding protein lepa; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
       0.525
RSc1986
Probable type iv pilus assembly fimv-related transmembrane protein.
  
     0.519
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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