STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rseBPutative sigma-e factor regulatory (negative regulator) transcription regulator protein. (369 aa)    
Predicted Functional Partners:
rseA
Putative transmembrane sigma-e factor negative regulatory transcription regulator protein.
 
 
 0.998
rpoE1
Probable rna polymerase sigma-e factor (sigma-24) transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.880
RSc1058
Probable periplasmic protease signal peptide protein; Belongs to the peptidase S1C family.
  
  
 0.619
RSc1059
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.597
RSc0053
Hypothetical protein of unknown function duf484.
  
     0.586
RSc2677
Putative type 4 fimbrial biogenesis pilw-related protein transmembrane.
  
     0.570
RSc1986
Probable type iv pilus assembly fimv-related transmembrane protein.
  
     0.519
fliJ
Probable flagellar protein.
  
     0.493
RSc1411
Putative membrane-associated zn-dependent protease 1 transmembrane protein; Belongs to the peptidase M50B family.
  
  
 0.491
RSc1397
Probable transmembrane protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
   
 0.489
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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