STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1383Probable peptidase protein. (341 aa)    
Predicted Functional Partners:
RSc1384
Putative peptidase m55 related protein.
   
 0.987
RSc1382
Probable transmembrane abc transporter protein.
 
    0.907
RSc1381
Probable transmembrane abc transporter protein.
 
    0.905
RSc1380
Probable substate-binding periplasmic (pbp) abc transporter protein.
 
     0.687
RSc1378
Probable l-asparaginase precursor protein.
 
     0.686
RSc1385
Probable lipoprotein transmembrane.
       0.625
RSc1377
Probable transcription regulator protein.
 
    0.550
RSc1379
Probable atp-binding abc transporter protein; Belongs to the ABC transporter superfamily.
       0.533
RSp1459
Putative predicted metal-dependent hydrolase with the tim-barrel fold signal peptide protein.
  
     0.410
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.