STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADINL_2675Aromatic hydrocarbon utilization transcriptional regulator CatR (LysR family); Belongs to the LysR transcriptional regulatory family. (302 aa)    
Predicted Functional Partners:
ADINL_0569
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.772
ADINL_0805
Glycine cleavage system transcriptional activator GcvA; Belongs to the LysR transcriptional regulatory family.
  
     0.758
ADINL_0883
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.752
ADINL_2093
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.751
ADINL_0246
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.747
ADINL_2964
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.742
ADINL_2926
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.736
ADINL_0832
Glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.720
ADINL_2931
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.714
ADINL_1953
Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme; Belongs to the LysR transcriptional regulatory family.
  
     0.694
Your Current Organism:
Nitrincola lacisaponensis
NCBI taxonomy Id: 267850
Other names: ATCC BAA-920, DSM 16316, N. lacisaponensis, Nitrincola lacisaponensis Dimitriu et al. 2005, strain 4CA
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