BQ2448_1030 protein (Microbotryum intermedium)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BQ2448_1030

BQ2448_1030 protein. (614 aa)

Predicted Functional Partners:

BQ2448_2317

0.919

BQ2448_3450

0.661

BQ2448_4889

0.656

BQ2448_595

0.601

BQ2448_5658

0.497

BQ2448_4283

0.497

BQ2448_4846

0.491

BQ2448_6930

0.425

BQ2448_7471

0.422

BQ2448_7344

0.422

Your Current Organism:

Microbotryum intermedium

NCBI taxonomy Id: 269621
Other names: HUV 3895, M. intermedium, Ustilago intermedia

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BQ2448_1030	BQ2448_2317	A0A238F823	A0A238F829	BQ2448_1030 protein.	BQ2448_2317 protein.	0.919
BQ2448_1030	BQ2448_3450	A0A238F823	A0A238FHQ0	BQ2448_1030 protein.	Lysophospholipase NTE1; Intracellular phospholipase B that catalyzes the double deacylation of phosphatidylcholine (PC) to glycerophosphocholine (GroPCho). Plays an important role in membrane lipid homeostasis.	0.661
BQ2448_1030	BQ2448_4283	A0A238F823	A0A238FNT4	BQ2448_1030 protein.	BQ2448_4283 protein.	0.497
BQ2448_1030	BQ2448_4846	A0A238F823	A0A238FEA5	BQ2448_1030 protein.	BQ2448_4846 protein.	0.491
BQ2448_1030	BQ2448_4889	A0A238F823	A0A238FG73	BQ2448_1030 protein.	BQ2448_4889 protein.	0.656
BQ2448_1030	BQ2448_5658	A0A238F823	A0A238EYQ8	BQ2448_1030 protein.	BQ2448_5658 protein.	0.497
BQ2448_1030	BQ2448_595	A0A238F823	A0A238F9D1	BQ2448_1030 protein.	BQ2448_595 protein.	0.601
BQ2448_1030	BQ2448_6930	A0A238F823	A0A238FIL8	BQ2448_1030 protein.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.425
BQ2448_1030	BQ2448_7344	A0A238F823	A0A238FQD3	BQ2448_1030 protein.	BQ2448_7344 protein.	0.422
BQ2448_1030	BQ2448_7471	A0A238F823	A0A238FK71	BQ2448_1030 protein.	BQ2448_7471 protein.	0.422
BQ2448_2317	BQ2448_1030	A0A238F829	A0A238F823	BQ2448_2317 protein.	BQ2448_1030 protein.	0.919
BQ2448_2317	BQ2448_3450	A0A238F829	A0A238FHQ0	BQ2448_2317 protein.	Lysophospholipase NTE1; Intracellular phospholipase B that catalyzes the double deacylation of phosphatidylcholine (PC) to glycerophosphocholine (GroPCho). Plays an important role in membrane lipid homeostasis.	0.912
BQ2448_2317	BQ2448_4283	A0A238F829	A0A238FNT4	BQ2448_2317 protein.	BQ2448_4283 protein.	0.845
BQ2448_2317	BQ2448_4846	A0A238F829	A0A238FEA5	BQ2448_2317 protein.	BQ2448_4846 protein.	0.882
BQ2448_2317	BQ2448_5658	A0A238F829	A0A238EYQ8	BQ2448_2317 protein.	BQ2448_5658 protein.	0.845
BQ2448_2317	BQ2448_595	A0A238F829	A0A238F9D1	BQ2448_2317 protein.	BQ2448_595 protein.	0.843
BQ2448_2317	BQ2448_6930	A0A238F829	A0A238FIL8	BQ2448_2317 protein.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.479
BQ2448_2317	BQ2448_7344	A0A238F829	A0A238FQD3	BQ2448_2317 protein.	BQ2448_7344 protein.	0.857
BQ2448_2317	BQ2448_7471	A0A238F829	A0A238FK71	BQ2448_2317 protein.	BQ2448_7471 protein.	0.857
BQ2448_3450	BQ2448_1030	A0A238FHQ0	A0A238F823	Lysophospholipase NTE1; Intracellular phospholipase B that catalyzes the double deacylation of phosphatidylcholine (PC) to glycerophosphocholine (GroPCho). Plays an important role in membrane lipid homeostasis.	BQ2448_1030 protein.	0.661