Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rru_A0080 | Rru_A0521 | Rru_A0080 | Rru_A0521 | Chemotaxis sensory transducer. | CheA Signal Transduction Histidine Kinases (STHK). | 0.925 |
Rru_A0080 | Rru_A0632 | Rru_A0080 | Rru_A0632 | Chemotaxis sensory transducer. | Chemotaxis sensory transducer. | 0.605 |
Rru_A0080 | Rru_A1109 | Rru_A0080 | Rru_A1109 | Chemotaxis sensory transducer. | Chemotaxis sensory transducer. | 0.646 |
Rru_A0080 | Rru_A1500 | Rru_A0080 | Rru_A1500 | Chemotaxis sensory transducer. | Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.793 |
Rru_A0080 | Rru_A2327 | Rru_A0080 | Rru_A2327 | Chemotaxis sensory transducer. | CheA Signal Transduction Histidine Kinases (STHK). | 0.670 |
Rru_A0080 | Rru_A2366 | Rru_A0080 | Rru_A2366 | Chemotaxis sensory transducer. | Methyl-accepting chemotaxis sensory transducer. | 0.700 |
Rru_A0080 | Rru_A2562 | Rru_A0080 | Rru_A2562 | Chemotaxis sensory transducer. | CheW protein. | 0.668 |
Rru_A0080 | Rru_A3465 | Rru_A0080 | Rru_A3465 | Chemotaxis sensory transducer. | Methyl-accepting chemotaxis sensory transducer. | 0.710 |
Rru_A0080 | Rru_A3496 | Rru_A0080 | Rru_A3496 | Chemotaxis sensory transducer. | Chemotaxis sensory transducer. | 0.724 |
Rru_A0080 | cheB1 | Rru_A0080 | Rru_A0523 | Chemotaxis sensory transducer. | Two component CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.610 |
Rru_A0521 | Rru_A0080 | Rru_A0521 | Rru_A0080 | CheA Signal Transduction Histidine Kinases (STHK). | Chemotaxis sensory transducer. | 0.925 |
Rru_A0521 | Rru_A0632 | Rru_A0521 | Rru_A0632 | CheA Signal Transduction Histidine Kinases (STHK). | Chemotaxis sensory transducer. | 0.983 |
Rru_A0521 | Rru_A1109 | Rru_A0521 | Rru_A1109 | CheA Signal Transduction Histidine Kinases (STHK). | Chemotaxis sensory transducer. | 0.952 |
Rru_A0521 | Rru_A1500 | Rru_A0521 | Rru_A1500 | CheA Signal Transduction Histidine Kinases (STHK). | Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.999 |
Rru_A0521 | Rru_A2327 | Rru_A0521 | Rru_A2327 | CheA Signal Transduction Histidine Kinases (STHK). | CheA Signal Transduction Histidine Kinases (STHK). | 0.959 |
Rru_A0521 | Rru_A2366 | Rru_A0521 | Rru_A2366 | CheA Signal Transduction Histidine Kinases (STHK). | Methyl-accepting chemotaxis sensory transducer. | 0.985 |
Rru_A0521 | Rru_A2562 | Rru_A0521 | Rru_A2562 | CheA Signal Transduction Histidine Kinases (STHK). | CheW protein. | 0.999 |
Rru_A0521 | Rru_A3465 | Rru_A0521 | Rru_A3465 | CheA Signal Transduction Histidine Kinases (STHK). | Methyl-accepting chemotaxis sensory transducer. | 0.952 |
Rru_A0521 | Rru_A3496 | Rru_A0521 | Rru_A3496 | CheA Signal Transduction Histidine Kinases (STHK). | Chemotaxis sensory transducer. | 0.952 |
Rru_A0521 | cheB1 | Rru_A0521 | Rru_A0523 | CheA Signal Transduction Histidine Kinases (STHK). | Two component CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.999 |
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