STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A0109Type II and III secretion system protein; Belongs to the bacterial secretin family. (547 aa)    
Predicted Functional Partners:
Rru_A0112
Conserved hypothetical protein.
 
  
 0.954
Rru_A0114
Type II secretion system protein.
 
  
 0.926
Rru_A0113
Type II secretion system protein E.
 
  
 0.925
Rru_A0108
Peptidase A24A, prepilin type IV; Belongs to the peptidase A24 family.
 
   
 0.866
Rru_A2706
Ankyrin.
 
  
 0.822
Rru_A0110
Hypothetical protein.
       0.776
Rru_A0111
Hypothetical protein.
       0.776
Rru_A0107
MSHA biogenesis protein MshM.
 
  
 0.673
Rru_A0118
Type II secretion system protein E.
 
   
 0.613
FliI
ATPase FliI/YscN.
  
  
 0.612
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.