STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A0579Glycosyl transferase, group 1. (357 aa)    
Predicted Functional Partners:
Rru_A0578
Metallophosphoesterase.
     0.982
Rru_A3114
Polysaccharide deacetylase.
  
  
 0.682
Rru_A0551
TPR domain protein.
  
 
 
 0.656
Rru_A2116
UDP-glucose 6-dehydrogenase.
  
 0.632
Rru_A2742
O-linked N-acetylglucosamine transferase SPINDLY family-like.
     
 0.565
Rru_A3095
Hypothetical protein.
      
 0.563
Rru_A0580
OsmC-like protein.
  
    0.541
Rru_A0583
Glycosyl transferase, group 1.
 
    
0.511
Rru_A0577
Conserved hypothetical protein.
  
    0.490
nrdR
Protein of unknown function DUF193; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
      
 0.489
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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