Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rru_A0930 | Rru_A0931 | Rru_A0930 | Rru_A0931 | Iron-containing alcohol dehydrogenase. | Aldehyde dehydrogenase (NAD+). | 0.977 |
Rru_A0930 | Rru_A1503 | Rru_A0930 | Rru_A1503 | Iron-containing alcohol dehydrogenase. | Zinc-containing alcohol dehydrogenase superfamily. | 0.980 |
Rru_A0930 | Rru_A3405 | Rru_A0930 | Rru_A3405 | Iron-containing alcohol dehydrogenase. | Formaldehyde dehydrogenase (glutathione); Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. | 0.980 |
Rru_A0931 | Rru_A0930 | Rru_A0931 | Rru_A0930 | Aldehyde dehydrogenase (NAD+). | Iron-containing alcohol dehydrogenase. | 0.977 |
Rru_A0931 | Rru_A1503 | Rru_A0931 | Rru_A1503 | Aldehyde dehydrogenase (NAD+). | Zinc-containing alcohol dehydrogenase superfamily. | 0.916 |
Rru_A0931 | Rru_A1927 | Rru_A0931 | Rru_A1927 | Aldehyde dehydrogenase (NAD+). | Acetyl-CoA hydrolase. | 0.909 |
Rru_A0931 | Rru_A3405 | Rru_A0931 | Rru_A3405 | Aldehyde dehydrogenase (NAD+). | Formaldehyde dehydrogenase (glutathione); Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. | 0.924 |
Rru_A0931 | ackA | Rru_A0931 | Rru_A0920 | Aldehyde dehydrogenase (NAD+). | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. | 0.917 |
Rru_A0931 | ackA-2 | Rru_A0931 | Rru_A1379 | Aldehyde dehydrogenase (NAD+). | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. | 0.917 |
Rru_A0931 | ackA-3 | Rru_A0931 | Rru_A1467 | Aldehyde dehydrogenase (NAD+). | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. | 0.917 |
Rru_A0931 | ackA-4 | Rru_A0931 | Rru_A2998 | Aldehyde dehydrogenase (NAD+). | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. | 0.955 |
Rru_A0931 | acsA | Rru_A0931 | Rru_A3575 | Aldehyde dehydrogenase (NAD+). | Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.939 |
Rru_A0931 | acyP | Rru_A0931 | Rru_A2654 | Aldehyde dehydrogenase (NAD+). | Acylphosphatase. | 0.907 |
Rru_A1503 | Rru_A0930 | Rru_A1503 | Rru_A0930 | Zinc-containing alcohol dehydrogenase superfamily. | Iron-containing alcohol dehydrogenase. | 0.980 |
Rru_A1503 | Rru_A0931 | Rru_A1503 | Rru_A0931 | Zinc-containing alcohol dehydrogenase superfamily. | Aldehyde dehydrogenase (NAD+). | 0.916 |
Rru_A1503 | Rru_A3405 | Rru_A1503 | Rru_A3405 | Zinc-containing alcohol dehydrogenase superfamily. | Formaldehyde dehydrogenase (glutathione); Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. | 0.976 |
Rru_A1927 | Rru_A0931 | Rru_A1927 | Rru_A0931 | Acetyl-CoA hydrolase. | Aldehyde dehydrogenase (NAD+). | 0.909 |
Rru_A1927 | ackA | Rru_A1927 | Rru_A0920 | Acetyl-CoA hydrolase. | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. | 0.906 |
Rru_A1927 | ackA-2 | Rru_A1927 | Rru_A1379 | Acetyl-CoA hydrolase. | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. | 0.906 |
Rru_A1927 | ackA-3 | Rru_A1927 | Rru_A1467 | Acetyl-CoA hydrolase. | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. | 0.906 |
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