Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rru_A1071 | Rru_A1276 | Rru_A1071 | Rru_A1276 | Adenylate/guanylate cyclase. | ATP-cone. | 0.900 |
Rru_A1071 | Rru_A1690 | Rru_A1071 | Rru_A1690 | Adenylate/guanylate cyclase. | MazG. | 0.900 |
Rru_A1071 | Rru_A1856 | Rru_A1071 | Rru_A1856 | Adenylate/guanylate cyclase. | (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.903 |
Rru_A1071 | Rru_A2361 | Rru_A1071 | Rru_A2361 | Adenylate/guanylate cyclase. | Multi-sensor hybrid histidine kinase. | 0.832 |
Rru_A1071 | Rru_A2465 | Rru_A1071 | Rru_A2465 | Adenylate/guanylate cyclase. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.912 |
Rru_A1071 | Rru_A3460 | Rru_A1071 | Rru_A3460 | Adenylate/guanylate cyclase. | Cyclic nucleotide-binding domain (cNMP-BD) protein. | 0.857 |
Rru_A1071 | cpdA | Rru_A1071 | Rru_A3490 | Adenylate/guanylate cyclase. | Metallophosphoesterase; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes. | 0.909 |
Rru_A1071 | moaA | Rru_A1071 | Rru_A0325 | Adenylate/guanylate cyclase. | Molybdenum cofactor biosynthesis protein; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. | 0.815 |
Rru_A1071 | moaA-2 | Rru_A1071 | Rru_A0518 | Adenylate/guanylate cyclase. | GTP cyclohydrolase subunit MoaA; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. | 0.815 |
Rru_A1071 | ndk | Rru_A1071 | Rru_A2169 | Adenylate/guanylate cyclase. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.912 |
Rru_A1276 | Rru_A1071 | Rru_A1276 | Rru_A1071 | ATP-cone. | Adenylate/guanylate cyclase. | 0.900 |
Rru_A1276 | Rru_A1690 | Rru_A1276 | Rru_A1690 | ATP-cone. | MazG. | 0.900 |
Rru_A1276 | Rru_A1856 | Rru_A1276 | Rru_A1856 | ATP-cone. | (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.900 |
Rru_A1276 | Rru_A2465 | Rru_A1276 | Rru_A2465 | ATP-cone. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.900 |
Rru_A1276 | moaA | Rru_A1276 | Rru_A0325 | ATP-cone. | Molybdenum cofactor biosynthesis protein; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. | 0.812 |
Rru_A1276 | moaA-2 | Rru_A1276 | Rru_A0518 | ATP-cone. | GTP cyclohydrolase subunit MoaA; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. | 0.812 |
Rru_A1276 | ndk | Rru_A1276 | Rru_A2169 | ATP-cone. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.918 |
Rru_A1690 | Rru_A1071 | Rru_A1690 | Rru_A1071 | MazG. | Adenylate/guanylate cyclase. | 0.900 |
Rru_A1690 | Rru_A1276 | Rru_A1690 | Rru_A1276 | MazG. | ATP-cone. | 0.900 |
Rru_A1690 | Rru_A1856 | Rru_A1690 | Rru_A1856 | MazG. | (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.925 |
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