STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A1268HAD-superfamily hydrolase subfamily IA, variant 3. (215 aa)    
Predicted Functional Partners:
Rru_A1267
Carbohydrate kinase, FGGY; Belongs to the FGGY kinase family.
 
   
 0.867
Rru_A1266
Photosystem I assembly BtpA.
 
     0.771
Rru_A1657
Major facilitator superfamily MFS_1.
  
  
 0.731
Rru_A2613
Conserved hypothetical protein.
  
    0.724
Rru_A1265
Transcriptional regulator, DeoR family.
 
    0.589
Rru_A1269
Rv0623-like transcription factor.
       0.548
Rru_A1605
Alpha amylase, catalytic region.
  
  
 0.506
Rru_A1880
Pyruvate dehydrogenase beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
  
 0.504
Rru_A1264
Short-chain dehydrogenase/reductase SDR.
 
 
 
 0.503
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
  
 
 0.474
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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