STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A1373Peptidase C14, caspase catalytic subunit p20. (305 aa)    
Predicted Functional Partners:
Rru_A1371
Hypothetical protein.
       0.773
Rru_A1372
Hypothetical protein.
       0.773
Rru_A1374
Peptidase C14, caspase catalytic subunit p20.
 
    
0.751
Rru_A1370
Hypothetical protein.
       0.714
Rru_A1375
Hypothetical protein.
       0.672
Rru_A1376
Hypothetical protein.
       0.598
Rru_A1377
Hypothetical protein.
       0.598
Rru_A1369
Hypothetical protein.
       0.538
Rru_A1368
Hypothetical protein.
       0.455
rplP
LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
  
     0.447
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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