Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rru_A0223 | Rru_A1789 | Rru_A0223 | Rru_A1789 | Polyphosphate:AMP phosphotransferase. | Cytochrome-c peroxidase. | 0.595 |
Rru_A0223 | Rru_A2504 | Rru_A0223 | Rru_A2504 | Polyphosphate:AMP phosphotransferase. | Coproporphyrinogen III oxidase, anaerobic; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.625 |
Rru_A0223 | Rru_A3331 | Rru_A0223 | Rru_A3331 | Polyphosphate:AMP phosphotransferase. | Cytochrome C oxidase, mono-heme subunit/FixO. | 0.593 |
Rru_A1760 | Rru_A1789 | Rru_A1760 | Rru_A1789 | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | Cytochrome-c peroxidase. | 0.404 |
Rru_A1788 | Rru_A1789 | Rru_A1788 | Rru_A1789 | Response regulator receiver domain protein (CheY). | Cytochrome-c peroxidase. | 0.480 |
Rru_A1789 | Rru_A0223 | Rru_A1789 | Rru_A0223 | Cytochrome-c peroxidase. | Polyphosphate:AMP phosphotransferase. | 0.595 |
Rru_A1789 | Rru_A1760 | Rru_A1789 | Rru_A1760 | Cytochrome-c peroxidase. | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.404 |
Rru_A1789 | Rru_A1788 | Rru_A1789 | Rru_A1788 | Cytochrome-c peroxidase. | Response regulator receiver domain protein (CheY). | 0.480 |
Rru_A1789 | Rru_A2310 | Rru_A1789 | Rru_A2310 | Cytochrome-c peroxidase. | Cytochrome c family protein. | 0.434 |
Rru_A1789 | Rru_A2504 | Rru_A1789 | Rru_A2504 | Cytochrome-c peroxidase. | Coproporphyrinogen III oxidase, anaerobic; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.468 |
Rru_A1789 | Rru_A2518 | Rru_A1789 | Rru_A2518 | Cytochrome-c peroxidase. | Multiple antibiotic resistance (MarC)-related proteins. | 0.477 |
Rru_A1789 | Rru_A3330 | Rru_A1789 | Rru_A3330 | Cytochrome-c peroxidase. | Cytochrome c oxidase cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | 0.662 |
Rru_A1789 | Rru_A3331 | Rru_A1789 | Rru_A3331 | Cytochrome-c peroxidase. | Cytochrome C oxidase, mono-heme subunit/FixO. | 0.415 |
Rru_A1789 | Rru_A3452 | Rru_A1789 | Rru_A3452 | Cytochrome-c peroxidase. | TonB-dependent receptor. | 0.452 |
Rru_A1789 | tolB | Rru_A1789 | Rru_A1094 | Cytochrome-c peroxidase. | TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.744 |
Rru_A2310 | Rru_A1789 | Rru_A2310 | Rru_A1789 | Cytochrome c family protein. | Cytochrome-c peroxidase. | 0.434 |
Rru_A2310 | Rru_A3330 | Rru_A2310 | Rru_A3330 | Cytochrome c family protein. | Cytochrome c oxidase cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | 0.625 |
Rru_A2310 | Rru_A3452 | Rru_A2310 | Rru_A3452 | Cytochrome c family protein. | TonB-dependent receptor. | 0.536 |
Rru_A2504 | Rru_A0223 | Rru_A2504 | Rru_A0223 | Coproporphyrinogen III oxidase, anaerobic; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Polyphosphate:AMP phosphotransferase. | 0.625 |
Rru_A2504 | Rru_A1789 | Rru_A2504 | Rru_A1789 | Coproporphyrinogen III oxidase, anaerobic; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Cytochrome-c peroxidase. | 0.468 |
page 1 of 2