STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A1960O-methyltransferase, family 3. (222 aa)    
Predicted Functional Partners:
Rru_A1961
Transcriptional regulator, TetR family.
 
     0.891
Rru_A1646
ETC complex I subunit conserved region.
  
  
 0.523
Rru_A2524
Peptidase U32.
  
  
 0.523
Rru_A2525
Peptidase U32.
  
  
 0.523
Rru_A1713
NAD(P)H dehydrogenase (quinone).
  
     0.492
Rru_A3302
Glucan 1,4-alpha-glucosidase.
  
     0.465
Rru_A2348
Glycosyl transferase.
  
 
 0.454
Rru_A2642
Alpha/beta hydrolase fold.
  
   0.433
Rru_A1962
Hypothetical protein.
       0.430
Rru_A3109
Aspartate racemase.
   
 
 0.411
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.