STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nikEABC transporter component; Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Nickel importer (TC 3.A.1.5.3) family. (277 aa)    
Predicted Functional Partners:
NikC
Binding-protein-dependent transport systems inner membrane component.
 
 0.998
nikD
ABC transporter component; Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Nickel importer (TC 3.A.1.5.3) family.
 
 
0.997
Rru_A2276
Binding-protein-dependent transport systems inner membrane component.
 
 0.989
Rru_A2277
Nickel ABC transporter, periplasmic nickel-binding.
 
 
 0.980
Rru_A2012
Binding-protein-dependent transport systems inner membrane component.
  
 0.973
Rru_A0981
Binding-protein-dependent transport systems inner membrane component.
  
 0.963
Rru_A0801
Binding-protein-dependent transport systems inner membrane component.
  
 0.962
Rru_A0590
Binding-protein-dependent transport systems inner membrane component.
  
 0.960
Rru_A2358
Binding-protein-dependent transport systems inner membrane component.
  
 0.956
Rru_A1919
Binding-protein-dependent transport systems inner membrane component.
  
 0.951
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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