Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Rru_A0435 | Rru_A2240 | Acyl-CoA dehydrogenase. | Short chain enoyl-CoA hydratase / Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.795 |
Rru_A0435 | Rru_A2506 | Acyl-CoA dehydrogenase. | Enoyl-CoA hydratase / short chain enoyl-CoA hydratase. | 0.787 |
Rru_A0435 | Rru_A3079 | Acyl-CoA dehydrogenase. | 3-hydroxyacyl-CoA dehydrogenase. | 0.702 |
Rru_A1308 | Rru_A2240 | Acyl-CoA dehydrogenase. | Short chain enoyl-CoA hydratase / Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.795 |
Rru_A1308 | Rru_A2506 | Acyl-CoA dehydrogenase. | Enoyl-CoA hydratase / short chain enoyl-CoA hydratase. | 0.787 |
Rru_A1308 | Rru_A3079 | Acyl-CoA dehydrogenase. | 3-hydroxyacyl-CoA dehydrogenase. | 0.657 |
Rru_A1500 | Rru_A2033 | Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | PAS/PAC sensor hybrid histidine kinase. | 0.994 |
Rru_A1500 | Rru_A2240 | Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | Short chain enoyl-CoA hydratase / Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.795 |
Rru_A1500 | Rru_A2361 | Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | Multi-sensor hybrid histidine kinase. | 0.998 |
Rru_A1500 | Rru_A2506 | Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | Enoyl-CoA hydratase / short chain enoyl-CoA hydratase. | 0.795 |
Rru_A1500 | Rru_A2820 | Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | Multi-sensor hybrid histidine kinase / cell cycle control histidine kinase CckA. | 0.994 |
Rru_A1835 | Rru_A2240 | Butyryl-CoA dehydrogenase. | Short chain enoyl-CoA hydratase / Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.826 |
Rru_A1835 | Rru_A2506 | Butyryl-CoA dehydrogenase. | Enoyl-CoA hydratase / short chain enoyl-CoA hydratase. | 0.829 |
Rru_A1835 | Rru_A3079 | Butyryl-CoA dehydrogenase. | 3-hydroxyacyl-CoA dehydrogenase. | 0.828 |
Rru_A2005 | Rru_A2240 | Glutaryl-CoA dehydrogenase. | Short chain enoyl-CoA hydratase / Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.607 |
Rru_A2005 | Rru_A2506 | Glutaryl-CoA dehydrogenase. | Enoyl-CoA hydratase / short chain enoyl-CoA hydratase. | 0.813 |
Rru_A2005 | Rru_A3079 | Glutaryl-CoA dehydrogenase. | 3-hydroxyacyl-CoA dehydrogenase. | 0.883 |
Rru_A2033 | Rru_A1500 | PAS/PAC sensor hybrid histidine kinase. | Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.994 |
Rru_A2033 | Rru_A2240 | PAS/PAC sensor hybrid histidine kinase. | Short chain enoyl-CoA hydratase / Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.783 |
Rru_A2033 | Rru_A2361 | PAS/PAC sensor hybrid histidine kinase. | Multi-sensor hybrid histidine kinase. | 0.994 |
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