Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Rru_A0102 | Rru_A0131 | Putative diguanylate cyclase (GGDEF domain). | Response regulator receiver (CheY) and unknown domain protein. | 0.418 |
Rru_A0102 | Rru_A0659 | Putative diguanylate cyclase (GGDEF domain). | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase. | 0.842 |
Rru_A0102 | Rru_A1653 | Putative diguanylate cyclase (GGDEF domain). | Guanylate cyclase (GGDEF domain) with PAS/PAC sensor and Response Regulator Receiver modulation. | 0.425 |
Rru_A0102 | Rru_A3180 | Putative diguanylate cyclase (GGDEF domain). | Metal dependent phosphohydrolase. | 0.925 |
Rru_A0131 | Rru_A0102 | Response regulator receiver (CheY) and unknown domain protein. | Putative diguanylate cyclase (GGDEF domain). | 0.418 |
Rru_A0131 | Rru_A3180 | Response regulator receiver (CheY) and unknown domain protein. | Metal dependent phosphohydrolase. | 0.934 |
Rru_A0631 | Rru_A0659 | Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain. | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase. | 0.881 |
Rru_A0631 | Rru_A0985 | Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain. | Putative diguanylate cyclase (GGDEF domain). | 0.501 |
Rru_A0631 | Rru_A1653 | Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain. | Guanylate cyclase (GGDEF domain) with PAS/PAC sensor and Response Regulator Receiver modulation. | 0.549 |
Rru_A0631 | Rru_A1908 | Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain. | Response regulator receiver modulated diguanylate cyclase. | 0.463 |
Rru_A0631 | Rru_A3180 | Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain. | Metal dependent phosphohydrolase. | 0.959 |
Rru_A0631 | Rru_A3374 | Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain. | Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain. | 0.463 |
Rru_A0659 | Rru_A0102 | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase. | Putative diguanylate cyclase (GGDEF domain). | 0.842 |
Rru_A0659 | Rru_A0631 | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase. | Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain. | 0.881 |
Rru_A0659 | Rru_A0985 | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase. | Putative diguanylate cyclase (GGDEF domain). | 0.823 |
Rru_A0659 | Rru_A1653 | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase. | Guanylate cyclase (GGDEF domain) with PAS/PAC sensor and Response Regulator Receiver modulation. | 0.816 |
Rru_A0659 | Rru_A1908 | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase. | Response regulator receiver modulated diguanylate cyclase. | 0.610 |
Rru_A0659 | Rru_A2555 | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase. | Putative diguanylate cyclase (GGDEF domain). | 0.814 |
Rru_A0659 | Rru_A3180 | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase. | Metal dependent phosphohydrolase. | 0.912 |
Rru_A0659 | Rru_A3374 | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase. | Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain. | 0.871 |
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