STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A3658Glycosyl transferase, group 1. (386 aa)    
Predicted Functional Partners:
Rru_A3656
Polysaccharide biosynthesis protein CapD.
 
  
 0.832
Rru_A3721
Sugar transferase.
 
  
 0.827
Rru_A3660
tRNA and rRNA cytosine-C5-methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
       0.781
Rru_A3659
Hypothetical protein.
       0.775
Rru_A3114
Polysaccharide deacetylase.
  
  
 0.682
Rru_A3657
Glycosyl transferase, family 4.
 
  
 0.682
Rru_A1482
Undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.680
Rru_A3102
Sugar transferase.
 
  
 0.615
Rru_A0551
TPR domain protein.
    
 
 0.598
Rru_A2742
O-linked N-acetylglucosamine transferase SPINDLY family-like.
     
 0.565
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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