Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Rru_A0551 | Rru_A2742 | TPR domain protein. | O-linked N-acetylglucosamine transferase SPINDLY family-like. | 0.734 |
Rru_A0551 | Rru_A3658 | TPR domain protein. | Glycosyl transferase, group 1. | 0.598 |
Rru_A1482 | Rru_A3656 | Undecaprenyl-phosphate galactosephosphotransferase. | Polysaccharide biosynthesis protein CapD. | 0.603 |
Rru_A1482 | Rru_A3658 | Undecaprenyl-phosphate galactosephosphotransferase. | Glycosyl transferase, group 1. | 0.680 |
Rru_A2742 | Rru_A0551 | O-linked N-acetylglucosamine transferase SPINDLY family-like. | TPR domain protein. | 0.734 |
Rru_A2742 | Rru_A3658 | O-linked N-acetylglucosamine transferase SPINDLY family-like. | Glycosyl transferase, group 1. | 0.565 |
Rru_A3102 | Rru_A3114 | Sugar transferase. | Polysaccharide deacetylase. | 0.774 |
Rru_A3102 | Rru_A3656 | Sugar transferase. | Polysaccharide biosynthesis protein CapD. | 0.609 |
Rru_A3102 | Rru_A3658 | Sugar transferase. | Glycosyl transferase, group 1. | 0.615 |
Rru_A3114 | Rru_A3102 | Polysaccharide deacetylase. | Sugar transferase. | 0.774 |
Rru_A3114 | Rru_A3658 | Polysaccharide deacetylase. | Glycosyl transferase, group 1. | 0.682 |
Rru_A3656 | Rru_A1482 | Polysaccharide biosynthesis protein CapD. | Undecaprenyl-phosphate galactosephosphotransferase. | 0.603 |
Rru_A3656 | Rru_A3102 | Polysaccharide biosynthesis protein CapD. | Sugar transferase. | 0.609 |
Rru_A3656 | Rru_A3657 | Polysaccharide biosynthesis protein CapD. | Glycosyl transferase, family 4. | 0.914 |
Rru_A3656 | Rru_A3658 | Polysaccharide biosynthesis protein CapD. | Glycosyl transferase, group 1. | 0.832 |
Rru_A3656 | Rru_A3659 | Polysaccharide biosynthesis protein CapD. | Hypothetical protein. | 0.604 |
Rru_A3656 | Rru_A3660 | Polysaccharide biosynthesis protein CapD. | tRNA and rRNA cytosine-C5-methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.616 |
Rru_A3656 | Rru_A3721 | Polysaccharide biosynthesis protein CapD. | Sugar transferase. | 0.677 |
Rru_A3657 | Rru_A3656 | Glycosyl transferase, family 4. | Polysaccharide biosynthesis protein CapD. | 0.914 |
Rru_A3657 | Rru_A3658 | Glycosyl transferase, family 4. | Glycosyl transferase, group 1. | 0.682 |
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