STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoIIAAAnti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family. (112 aa)    
Predicted Functional Partners:
CHU_1216
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
 
 0.984
CHU_0193
Conserved hypothetical protein (possible anti-sigma factor).
 
 
 0.980
rsbU
Sigma factor sigB regulation protein.
 
 
 0.968
evgS-3
Sensor histidine kinase/response regulator fusion protein.
  
  
 0.908
rsbU-2
Sigma factor regulation protein.
 
 
 0.907
CHU_2080
Sensor histidine kinase/response regulator fusion protein.
  
  
 0.852
CHU_3500
Anti-sigma regulatory factor.
 
 
 0.837
arcB-11
Multi-sensor hybrid histidine kinase.
  
  
 0.831
CHU_2895
PAS/PAC sensor hybrid histidine kinase.
  
  
 0.775
CHU_1217
Anti-sigma regulatory factor; Ser/Thr protein kinase.
  
 
 0.665
Your Current Organism:
Cytophaga hutchinsonii
NCBI taxonomy Id: 269798
Other names: C. hutchinsonii ATCC 33406, Cytophaga hutchinsonii ATCC 33406, Cytophaga hutchinsonii str. ATCC 33406, Cytophaga hutchinsonii strain ATCC 33406
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.