STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHU_0602Lipid A core--O-antigen ligase. (416 aa)    
Predicted Functional Partners:
kdtA
3-deoxy-D-manno-octulosonic-acid transferase, glycosyltransferase family 30 protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.909
CHU_1927
Bacterial sugar transferase.
 
  
 0.891
CHU_2176
Conserved hypothetical protein; possible exporter of O-antigen and teichoic acid.
 
  
 0.817
CHU_0603
Polysaccharide deacetylase.
       0.774
CHU_2177
Membrane protein of EXOQ family/lipid A core - O-antigen ligase.
  
     0.766
CHU_1044
B-glycosyltransferase, glycosyltransferase family 2 protein.
 
  
 0.754
rfaG
A-glycosyltransferase, glycosyltransferase family 4 protein.
  
    0.727
CHU_0929
A-glycosyltransferase-related protein, glycosyltransferase family 4 protein.
  
    0.715
CHU_3386
Phosphatase.
  
     0.710
CHU_2781
A-glycosyltransferase-related protein, glycosyltransferase family 4 protein.
  
    0.697
Your Current Organism:
Cytophaga hutchinsonii
NCBI taxonomy Id: 269798
Other names: C. hutchinsonii ATCC 33406, Cytophaga hutchinsonii ATCC 33406, Cytophaga hutchinsonii str. ATCC 33406, Cytophaga hutchinsonii strain ATCC 33406
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