Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CHU_0193 | CHU_1702 | CHU_0193 | CHU_1702 | Conserved hypothetical protein (possible anti-sigma factor). | Anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family. | 0.832 |
CHU_0193 | CHU_2895 | CHU_0193 | CHU_2895 | Conserved hypothetical protein (possible anti-sigma factor). | PAS/PAC sensor hybrid histidine kinase. | 0.818 |
CHU_0193 | CHU_3500 | CHU_0193 | CHU_3500 | Conserved hypothetical protein (possible anti-sigma factor). | Anti-sigma regulatory factor. | 0.582 |
CHU_0193 | arcB-11 | CHU_0193 | CHU_2784 | Conserved hypothetical protein (possible anti-sigma factor). | Multi-sensor hybrid histidine kinase. | 0.841 |
CHU_0193 | evgS-3 | CHU_0193 | CHU_3089 | Conserved hypothetical protein (possible anti-sigma factor). | Sensor histidine kinase/response regulator fusion protein. | 0.852 |
CHU_0193 | rsbU-2 | CHU_0193 | CHU_2179 | Conserved hypothetical protein (possible anti-sigma factor). | Sigma factor regulation protein. | 0.859 |
CHU_0193 | spoIIA | CHU_0193 | CHU_1913 | Conserved hypothetical protein (possible anti-sigma factor). | Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family. | 0.780 |
CHU_0193 | spoIIAA | CHU_0193 | CHU_0194 | Conserved hypothetical protein (possible anti-sigma factor). | Anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family. | 0.980 |
CHU_1702 | CHU_0193 | CHU_1702 | CHU_0193 | Anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family. | Conserved hypothetical protein (possible anti-sigma factor). | 0.832 |
CHU_1702 | CHU_2895 | CHU_1702 | CHU_2895 | Anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family. | PAS/PAC sensor hybrid histidine kinase. | 0.775 |
CHU_1702 | CHU_3500 | CHU_1702 | CHU_3500 | Anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family. | Anti-sigma regulatory factor. | 0.901 |
CHU_1702 | arcB-11 | CHU_1702 | CHU_2784 | Anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family. | Multi-sensor hybrid histidine kinase. | 0.831 |
CHU_1702 | evgS-3 | CHU_1702 | CHU_3089 | Anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family. | Sensor histidine kinase/response regulator fusion protein. | 0.908 |
CHU_1702 | rsbU-2 | CHU_1702 | CHU_2179 | Anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family. | Sigma factor regulation protein. | 0.885 |
CHU_2895 | CHU_0193 | CHU_2895 | CHU_0193 | PAS/PAC sensor hybrid histidine kinase. | Conserved hypothetical protein (possible anti-sigma factor). | 0.818 |
CHU_2895 | CHU_1702 | CHU_2895 | CHU_1702 | PAS/PAC sensor hybrid histidine kinase. | Anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family. | 0.775 |
CHU_2895 | CHU_3500 | CHU_2895 | CHU_3500 | PAS/PAC sensor hybrid histidine kinase. | Anti-sigma regulatory factor. | 0.818 |
CHU_2895 | arcB-11 | CHU_2895 | CHU_2784 | PAS/PAC sensor hybrid histidine kinase. | Multi-sensor hybrid histidine kinase. | 0.979 |
CHU_2895 | evgS-3 | CHU_2895 | CHU_3089 | PAS/PAC sensor hybrid histidine kinase. | Sensor histidine kinase/response regulator fusion protein. | 0.982 |
CHU_2895 | rsbU-2 | CHU_2895 | CHU_2179 | PAS/PAC sensor hybrid histidine kinase. | Sigma factor regulation protein. | 0.824 |
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