STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speAArginine decarboxylase, biosynthetic type; Catalyzes the biosynthesis of agmatine from arginine. (635 aa)    
Predicted Functional Partners:
argH
Argininosuccinate lyase.
     
 0.838
nspC
Carboxynorspermidine/carboxyspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.
 
  
 0.744
aguA
Agmatine deiminase, putative; Belongs to the agmatine deiminase family.
 
   
 0.654
Gmet_0902
Carboxynorspermidine/carboxyspermidine dehydrogenase.
 
   
 0.629
fabD-2
malonyl-CoA--acyl carrier protein transacylase.
   
    0.513
aguB
N-carbamylputrescine amidohydrolase.
 
   
 0.510
fabD-1
malonyl-CoA--acyl carrier protein transacylase.
   
    0.471
Gmet_0905
ATPase, AAA family.
       0.460
gpsA
Glycerol-3-phosphate dehydrogenase, NAD(P)-dependent; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
   
    0.412
Your Current Organism:
Geobacter metallireducens
NCBI taxonomy Id: 269799
Other names: G. metallireducens GS-15, Geobacter metallireducens GS-15, Geobacter metallireducens str. GS-15, Geobacter metallireducens strain GS-15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.