Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Gmet_1797 | bamC-1 | Gmet_1797 | Gmet_2086 | Type II restriction endonuclease, zinc finger. | Iron-sulfur cluster-binding oxidoreductase, putative benzoyl-CoA reductase electron transfer protein. | 0.841 |
| Gmet_3306 | bamA | Gmet_3306 | Gmet_2088 | Short-chain acyl-CoA dehydrogenase. | 6-oxocyclohex-1-ene-1-carbonyl-CoA hydratase; Involved in the central benzoyl-CoA catabolism. Catalyzes the addition of one molecule of water to the double bond and the hydrolytic cleavage of C-C bond in the alicyclic ring, 6-oxocyclohex-1-ene-1- carbonyl-CoA (6-OCH-CoA) to yield 3-hydroxypimelyl-CoA. Belongs to the enoyl-CoA hydratase/isomerase family. | 0.473 |
| Gmet_3306 | bamB-1 | Gmet_3306 | Gmet_2087 | Short-chain acyl-CoA dehydrogenase. | benzoyl-CoA reductase, putative. | 0.900 |
| Gmet_3306 | bamC-1 | Gmet_3306 | Gmet_2086 | Short-chain acyl-CoA dehydrogenase. | Iron-sulfur cluster-binding oxidoreductase, putative benzoyl-CoA reductase electron transfer protein. | 0.900 |
| Gmet_3306 | bamR | Gmet_3306 | Gmet_2150 | Short-chain acyl-CoA dehydrogenase. | cyclohexa-1,5-dienecarbonyl-CoA hydratase. | 0.946 |
| actB1 | bamB-1 | Gmet_1810 | Gmet_2087 | Menaquinol oxidoreductase complex ACIII, molybdopterin-binding-like subunit ActB1; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | benzoyl-CoA reductase, putative. | 0.476 |
| actB1 | bamB-2 | Gmet_1810 | Gmet_1802 | Menaquinol oxidoreductase complex ACIII, molybdopterin-binding-like subunit ActB1; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | benzoyl-CoA reductase, putative. | 0.555 |
| actB1 | bamC-1 | Gmet_1810 | Gmet_2086 | Menaquinol oxidoreductase complex ACIII, molybdopterin-binding-like subunit ActB1; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Iron-sulfur cluster-binding oxidoreductase, putative benzoyl-CoA reductase electron transfer protein. | 0.830 |
| actB1 | bamE | Gmet_1810 | Gmet_2084 | Menaquinol oxidoreductase complex ACIII, molybdopterin-binding-like subunit ActB1; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Polyferredoxin, putative benzoyl-CoA reductase electron transfer protein. | 0.494 |
| bamA | Gmet_3306 | Gmet_2088 | Gmet_3306 | 6-oxocyclohex-1-ene-1-carbonyl-CoA hydratase; Involved in the central benzoyl-CoA catabolism. Catalyzes the addition of one molecule of water to the double bond and the hydrolytic cleavage of C-C bond in the alicyclic ring, 6-oxocyclohex-1-ene-1- carbonyl-CoA (6-OCH-CoA) to yield 3-hydroxypimelyl-CoA. Belongs to the enoyl-CoA hydratase/isomerase family. | Short-chain acyl-CoA dehydrogenase. | 0.473 |
| bamA | bamB-1 | Gmet_2088 | Gmet_2087 | 6-oxocyclohex-1-ene-1-carbonyl-CoA hydratase; Involved in the central benzoyl-CoA catabolism. Catalyzes the addition of one molecule of water to the double bond and the hydrolytic cleavage of C-C bond in the alicyclic ring, 6-oxocyclohex-1-ene-1- carbonyl-CoA (6-OCH-CoA) to yield 3-hydroxypimelyl-CoA. Belongs to the enoyl-CoA hydratase/isomerase family. | benzoyl-CoA reductase, putative. | 0.867 |
| bamA | bamB-2 | Gmet_2088 | Gmet_1802 | 6-oxocyclohex-1-ene-1-carbonyl-CoA hydratase; Involved in the central benzoyl-CoA catabolism. Catalyzes the addition of one molecule of water to the double bond and the hydrolytic cleavage of C-C bond in the alicyclic ring, 6-oxocyclohex-1-ene-1- carbonyl-CoA (6-OCH-CoA) to yield 3-hydroxypimelyl-CoA. Belongs to the enoyl-CoA hydratase/isomerase family. | benzoyl-CoA reductase, putative. | 0.766 |
| bamA | bamC-1 | Gmet_2088 | Gmet_2086 | 6-oxocyclohex-1-ene-1-carbonyl-CoA hydratase; Involved in the central benzoyl-CoA catabolism. Catalyzes the addition of one molecule of water to the double bond and the hydrolytic cleavage of C-C bond in the alicyclic ring, 6-oxocyclohex-1-ene-1- carbonyl-CoA (6-OCH-CoA) to yield 3-hydroxypimelyl-CoA. Belongs to the enoyl-CoA hydratase/isomerase family. | Iron-sulfur cluster-binding oxidoreductase, putative benzoyl-CoA reductase electron transfer protein. | 0.863 |
| bamA | bamD | Gmet_2088 | Gmet_2085 | 6-oxocyclohex-1-ene-1-carbonyl-CoA hydratase; Involved in the central benzoyl-CoA catabolism. Catalyzes the addition of one molecule of water to the double bond and the hydrolytic cleavage of C-C bond in the alicyclic ring, 6-oxocyclohex-1-ene-1- carbonyl-CoA (6-OCH-CoA) to yield 3-hydroxypimelyl-CoA. Belongs to the enoyl-CoA hydratase/isomerase family. | Iron-sulfur cluster-binding oxidoreductase, CCG domain pair-containing, putative benzoyl-CoA reductase electron transfer protein. | 0.531 |
| bamA | bamE | Gmet_2088 | Gmet_2084 | 6-oxocyclohex-1-ene-1-carbonyl-CoA hydratase; Involved in the central benzoyl-CoA catabolism. Catalyzes the addition of one molecule of water to the double bond and the hydrolytic cleavage of C-C bond in the alicyclic ring, 6-oxocyclohex-1-ene-1- carbonyl-CoA (6-OCH-CoA) to yield 3-hydroxypimelyl-CoA. Belongs to the enoyl-CoA hydratase/isomerase family. | Polyferredoxin, putative benzoyl-CoA reductase electron transfer protein. | 0.505 |
| bamA | bamK | Gmet_2088 | Gmet_2077 | 6-oxocyclohex-1-ene-1-carbonyl-CoA hydratase; Involved in the central benzoyl-CoA catabolism. Catalyzes the addition of one molecule of water to the double bond and the hydrolytic cleavage of C-C bond in the alicyclic ring, 6-oxocyclohex-1-ene-1- carbonyl-CoA (6-OCH-CoA) to yield 3-hydroxypimelyl-CoA. Belongs to the enoyl-CoA hydratase/isomerase family. | Acetyltransferase, putative. | 0.790 |
| bamA | bamR | Gmet_2088 | Gmet_2150 | 6-oxocyclohex-1-ene-1-carbonyl-CoA hydratase; Involved in the central benzoyl-CoA catabolism. Catalyzes the addition of one molecule of water to the double bond and the hydrolytic cleavage of C-C bond in the alicyclic ring, 6-oxocyclohex-1-ene-1- carbonyl-CoA (6-OCH-CoA) to yield 3-hydroxypimelyl-CoA. Belongs to the enoyl-CoA hydratase/isomerase family. | cyclohexa-1,5-dienecarbonyl-CoA hydratase. | 0.883 |
| bamB-1 | Gmet_3306 | Gmet_2087 | Gmet_3306 | benzoyl-CoA reductase, putative. | Short-chain acyl-CoA dehydrogenase. | 0.900 |
| bamB-1 | actB1 | Gmet_2087 | Gmet_1810 | benzoyl-CoA reductase, putative. | Menaquinol oxidoreductase complex ACIII, molybdopterin-binding-like subunit ActB1; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.476 |
| bamB-1 | bamA | Gmet_2087 | Gmet_2088 | benzoyl-CoA reductase, putative. | 6-oxocyclohex-1-ene-1-carbonyl-CoA hydratase; Involved in the central benzoyl-CoA catabolism. Catalyzes the addition of one molecule of water to the double bond and the hydrolytic cleavage of C-C bond in the alicyclic ring, 6-oxocyclohex-1-ene-1- carbonyl-CoA (6-OCH-CoA) to yield 3-hydroxypimelyl-CoA. Belongs to the enoyl-CoA hydratase/isomerase family. | 0.867 |
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