STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
macACytochrome c peroxidase; Contains 2 heme-binding sites. (346 aa)    
Predicted Functional Partners:
Gmet_0556
NHL repeat domain protein.
  
 
 0.747
Gmet_1869
NHL repeat domain lipoprotein.
  
 
 0.747
Gmet_2897
NHL repeat domain lipoprotein.
  
 
 0.747
omcZ
Contains 8 heme-binding sites.
      
 0.676
omcX
Contains 12 heme-binding sites.
      
 0.676
Gmet_0155
Contains 1 heme-binding site.
  
  
 0.622
ppcA
Cytochrome c; May be involved in anaerobic iron respiration. Belongs to the cytochrome c family.
      
 0.622
cccA
Catalase, 2 heme-binding sites.
  
  
 0.566
tolB
Biopolymer transport periplasmic beta-propeller repeat protein, TolB-related protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.563
Gmet_3092
Hypothetical protein.
       0.558
Your Current Organism:
Geobacter metallireducens
NCBI taxonomy Id: 269799
Other names: G. metallireducens GS-15, Geobacter metallireducens GS-15, Geobacter metallireducens str. GS-15, Geobacter metallireducens strain GS-15
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