Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Gmet_0155 | Gmet_0556 | Gmet_0155 | Gmet_0556 | Contains 1 heme-binding site. | NHL repeat domain protein. | 0.569 |
Gmet_0155 | Gmet_1869 | Gmet_0155 | Gmet_1869 | Contains 1 heme-binding site. | NHL repeat domain lipoprotein. | 0.477 |
Gmet_0155 | Gmet_2897 | Gmet_0155 | Gmet_2897 | Contains 1 heme-binding site. | NHL repeat domain lipoprotein. | 0.477 |
Gmet_0155 | macA | Gmet_0155 | Gmet_3091 | Contains 1 heme-binding site. | Cytochrome c peroxidase; Contains 2 heme-binding sites. | 0.622 |
Gmet_0155 | ppcA | Gmet_0155 | Gmet_2902 | Contains 1 heme-binding site. | Cytochrome c; May be involved in anaerobic iron respiration. Belongs to the cytochrome c family. | 0.441 |
Gmet_0556 | Gmet_0155 | Gmet_0556 | Gmet_0155 | NHL repeat domain protein. | Contains 1 heme-binding site. | 0.569 |
Gmet_0556 | cccA | Gmet_0556 | Gmet_1094 | NHL repeat domain protein. | Catalase, 2 heme-binding sites. | 0.747 |
Gmet_0556 | macA | Gmet_0556 | Gmet_3091 | NHL repeat domain protein. | Cytochrome c peroxidase; Contains 2 heme-binding sites. | 0.747 |
Gmet_0556 | omcX | Gmet_0556 | Gmet_2839 | NHL repeat domain protein. | Contains 12 heme-binding sites. | 0.403 |
Gmet_0556 | tolB | Gmet_0556 | Gmet_3540 | NHL repeat domain protein. | Biopolymer transport periplasmic beta-propeller repeat protein, TolB-related protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.562 |
Gmet_1869 | Gmet_0155 | Gmet_1869 | Gmet_0155 | NHL repeat domain lipoprotein. | Contains 1 heme-binding site. | 0.477 |
Gmet_1869 | cccA | Gmet_1869 | Gmet_1094 | NHL repeat domain lipoprotein. | Catalase, 2 heme-binding sites. | 0.747 |
Gmet_1869 | macA | Gmet_1869 | Gmet_3091 | NHL repeat domain lipoprotein. | Cytochrome c peroxidase; Contains 2 heme-binding sites. | 0.747 |
Gmet_1869 | tolB | Gmet_1869 | Gmet_3540 | NHL repeat domain lipoprotein. | Biopolymer transport periplasmic beta-propeller repeat protein, TolB-related protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.562 |
Gmet_2897 | Gmet_0155 | Gmet_2897 | Gmet_0155 | NHL repeat domain lipoprotein. | Contains 1 heme-binding site. | 0.477 |
Gmet_2897 | cccA | Gmet_2897 | Gmet_1094 | NHL repeat domain lipoprotein. | Catalase, 2 heme-binding sites. | 0.747 |
Gmet_2897 | macA | Gmet_2897 | Gmet_3091 | NHL repeat domain lipoprotein. | Cytochrome c peroxidase; Contains 2 heme-binding sites. | 0.747 |
Gmet_2897 | tolB | Gmet_2897 | Gmet_3540 | NHL repeat domain lipoprotein. | Biopolymer transport periplasmic beta-propeller repeat protein, TolB-related protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.562 |
Gmet_3092 | macA | Gmet_3092 | Gmet_3091 | Hypothetical protein. | Cytochrome c peroxidase; Contains 2 heme-binding sites. | 0.558 |
cccA | Gmet_0556 | Gmet_1094 | Gmet_0556 | Catalase, 2 heme-binding sites. | NHL repeat domain protein. | 0.747 |
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