Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Tfu_0360 | Tfu_0361 | Tfu_0360 | Tfu_0361 | Putative oxidoreductase. | Oxidoreductase, short chain dehydrogenase/reductase family. | 0.604 |
Tfu_0360 | Tfu_0958 | Tfu_0360 | Tfu_0958 | Putative oxidoreductase. | Conserved hypothetical protein. | 0.907 |
Tfu_0360 | Tfu_1218 | Tfu_0360 | Tfu_1218 | Putative oxidoreductase. | Actinorhodin polyketide beta-ketoacyl synthase alpha subunit / 3-oxoacyl-ACP synthase I; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 0.903 |
Tfu_0360 | Tfu_1231 | Tfu_0360 | Tfu_1231 | Putative oxidoreductase. | Modular polyketide synthase. | 0.905 |
Tfu_0360 | Tfu_1844 | Tfu_0360 | Tfu_1844 | Putative oxidoreductase. | Conserved hypothetical protein. | 0.569 |
Tfu_0360 | Tfu_1866 | Tfu_0360 | Tfu_1866 | Putative oxidoreductase. | Amino acid adenylation. | 0.516 |
Tfu_0360 | Tfu_1976 | Tfu_0360 | Tfu_1976 | Putative oxidoreductase. | 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | 0.903 |
Tfu_0360 | Tfu_2485 | Tfu_0360 | Tfu_2485 | Putative oxidoreductase. | acyl-CoA dehydrogenase. | 0.541 |
Tfu_0360 | Tfu_3108 | Tfu_0360 | Tfu_3108 | Putative oxidoreductase. | Thioredoxin reductase. | 0.532 |
Tfu_0360 | prfC | Tfu_0360 | Tfu_0359 | Putative oxidoreductase. | Bacterial peptide chain release factor 3 (bRF-3); Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | 0.535 |
Tfu_0361 | Tfu_0360 | Tfu_0361 | Tfu_0360 | Oxidoreductase, short chain dehydrogenase/reductase family. | Putative oxidoreductase. | 0.604 |
Tfu_0361 | Tfu_0958 | Tfu_0361 | Tfu_0958 | Oxidoreductase, short chain dehydrogenase/reductase family. | Conserved hypothetical protein. | 0.469 |
Tfu_0361 | Tfu_1844 | Tfu_0361 | Tfu_1844 | Oxidoreductase, short chain dehydrogenase/reductase family. | Conserved hypothetical protein. | 0.591 |
Tfu_0958 | Tfu_0360 | Tfu_0958 | Tfu_0360 | Conserved hypothetical protein. | Putative oxidoreductase. | 0.907 |
Tfu_0958 | Tfu_0361 | Tfu_0958 | Tfu_0361 | Conserved hypothetical protein. | Oxidoreductase, short chain dehydrogenase/reductase family. | 0.469 |
Tfu_0958 | Tfu_1844 | Tfu_0958 | Tfu_1844 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.661 |
Tfu_0958 | Tfu_2485 | Tfu_0958 | Tfu_2485 | Conserved hypothetical protein. | acyl-CoA dehydrogenase. | 0.588 |
Tfu_1218 | Tfu_0360 | Tfu_1218 | Tfu_0360 | Actinorhodin polyketide beta-ketoacyl synthase alpha subunit / 3-oxoacyl-ACP synthase I; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | Putative oxidoreductase. | 0.903 |
Tfu_1218 | Tfu_1231 | Tfu_1218 | Tfu_1231 | Actinorhodin polyketide beta-ketoacyl synthase alpha subunit / 3-oxoacyl-ACP synthase I; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | Modular polyketide synthase. | 0.993 |
Tfu_1218 | Tfu_1866 | Tfu_1218 | Tfu_1866 | Actinorhodin polyketide beta-ketoacyl synthase alpha subunit / 3-oxoacyl-ACP synthase I; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | Amino acid adenylation. | 0.895 |
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