Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Tfu_0227 | Tfu_0520 | Tfu_0227 | Tfu_0520 | Conserved hypothetical protein. | Rhodanese-like protein. | 0.988 |
Tfu_0227 | Tfu_2369 | Tfu_0227 | Tfu_2369 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.904 |
Tfu_0227 | thiG | Tfu_0227 | Tfu_1042 | Conserved hypothetical protein. | Thiamine biosynthesis ThiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.803 |
Tfu_0520 | Tfu_0227 | Tfu_0520 | Tfu_0227 | Rhodanese-like protein. | Conserved hypothetical protein. | 0.988 |
Tfu_0520 | Tfu_1043 | Tfu_0520 | Tfu_1043 | Rhodanese-like protein. | ThiS, thiamine-biosynthesis. | 0.853 |
Tfu_0520 | Tfu_1044 | Tfu_0520 | Tfu_1044 | Rhodanese-like protein. | Thiamine biosynthesis oxidoreductase ThiO. | 0.402 |
Tfu_0520 | Tfu_2250 | Tfu_0520 | Tfu_2250 | Rhodanese-like protein. | Phosphomethylpyrimidine kinase. | 0.615 |
Tfu_0520 | Tfu_2369 | Tfu_0520 | Tfu_2369 | Rhodanese-like protein. | Conserved hypothetical protein. | 0.988 |
Tfu_0520 | Tfu_2519 | Tfu_0520 | Tfu_2519 | Rhodanese-like protein. | FO synthase subunit 1 / FO synthase subunit 2. | 0.582 |
Tfu_0520 | thiE | Tfu_0520 | Tfu_1046 | Rhodanese-like protein. | Thiamine monophosphate synthase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.674 |
Tfu_0520 | thiG | Tfu_0520 | Tfu_1042 | Rhodanese-like protein. | Thiamine biosynthesis ThiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.934 |
Tfu_1043 | Tfu_0520 | Tfu_1043 | Tfu_0520 | ThiS, thiamine-biosynthesis. | Rhodanese-like protein. | 0.853 |
Tfu_1043 | Tfu_1044 | Tfu_1043 | Tfu_1044 | ThiS, thiamine-biosynthesis. | Thiamine biosynthesis oxidoreductase ThiO. | 0.933 |
Tfu_1043 | Tfu_2250 | Tfu_1043 | Tfu_2250 | ThiS, thiamine-biosynthesis. | Phosphomethylpyrimidine kinase. | 0.830 |
Tfu_1043 | Tfu_2519 | Tfu_1043 | Tfu_2519 | ThiS, thiamine-biosynthesis. | FO synthase subunit 1 / FO synthase subunit 2. | 0.751 |
Tfu_1043 | thiE | Tfu_1043 | Tfu_1046 | ThiS, thiamine-biosynthesis. | Thiamine monophosphate synthase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.925 |
Tfu_1043 | thiG | Tfu_1043 | Tfu_1042 | ThiS, thiamine-biosynthesis. | Thiamine biosynthesis ThiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.998 |
Tfu_1044 | Tfu_0520 | Tfu_1044 | Tfu_0520 | Thiamine biosynthesis oxidoreductase ThiO. | Rhodanese-like protein. | 0.402 |
Tfu_1044 | Tfu_1043 | Tfu_1044 | Tfu_1043 | Thiamine biosynthesis oxidoreductase ThiO. | ThiS, thiamine-biosynthesis. | 0.933 |
Tfu_1044 | Tfu_2250 | Tfu_1044 | Tfu_2250 | Thiamine biosynthesis oxidoreductase ThiO. | Phosphomethylpyrimidine kinase. | 0.639 |
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