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Tfu_1271 protein (Thermobifida fusca) - STRING interaction network
"Tfu_1271" - PAS:protein phosphatase 2C-like:GAF in Thermobifida fusca
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tfu_1271PAS-protein phosphatase 2C-like-GAF (585 aa)    
Predicted Functional Partners:
Tfu_0122
Anti-sigma factor antagonist (117 aa)
 
 
  0.887
Tfu_2796
Protein phosphatase 2C (397 aa)
   
          0.772
Tfu_3055
Anti-sigma factor antagonist (151 aa)
 
     
  0.759
Tfu_2200
Protein phosphatase 2C-like (368 aa)
   
          0.724
Tfu_3088
Lycopene cyclase (393 aa)
   
          0.649
Tfu_2764
Anti-sigma factor antagonist (122 aa)
 
     
  0.565
Tfu_1272
Hypothetical protein (237 aa)
              0.550
Tfu_2498
Hypothetical protein (203 aa)
   
          0.547
tilS
Fis family transcriptional regulator; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine (324 aa)
 
        0.534
Tfu_1270
Alcohol dehydrogenase (359 aa)
              0.514
Your Current Organism:
Thermobifida fusca
NCBI taxonomy Id: 269800
Other names: T. fusca, T. fusca YX, Thermobifida, Thermobifida fusca, Thermobifida fusca YX, Thermobifida fusca str. YX, Thermobifida fusca strain YX, Thermomonospora fusca, Thermonospora fusca
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