Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Tfu_0247 | Tfu_0434 | Citrate synthase; Belongs to the citrate synthase family. | L-proline dehydrogenase. | 0.636 |
Tfu_0247 | Tfu_0566 | Citrate synthase; Belongs to the citrate synthase family. | 2-oxoglutarate dehydrogenase E1 component. | 0.976 |
Tfu_0247 | Tfu_2451 | Citrate synthase; Belongs to the citrate synthase family. | Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | 0.892 |
Tfu_0247 | Tfu_2452 | Citrate synthase; Belongs to the citrate synthase family. | Succinate dehydrogenase subunit A. | 0.839 |
Tfu_0247 | Tfu_2590 | Citrate synthase; Belongs to the citrate synthase family. | Aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family. | 0.880 |
Tfu_0247 | Tfu_2674 | Citrate synthase; Belongs to the citrate synthase family. | 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit. | 0.949 |
Tfu_0247 | Tfu_2949 | Citrate synthase; Belongs to the citrate synthase family. | Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.880 |
Tfu_0434 | Tfu_0247 | L-proline dehydrogenase. | Citrate synthase; Belongs to the citrate synthase family. | 0.636 |
Tfu_0434 | Tfu_2590 | L-proline dehydrogenase. | Aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family. | 0.928 |
Tfu_0434 | Tfu_2949 | L-proline dehydrogenase. | Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.930 |
Tfu_0566 | Tfu_0247 | 2-oxoglutarate dehydrogenase E1 component. | Citrate synthase; Belongs to the citrate synthase family. | 0.976 |
Tfu_0566 | Tfu_2451 | 2-oxoglutarate dehydrogenase E1 component. | Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | 0.977 |
Tfu_0566 | Tfu_2452 | 2-oxoglutarate dehydrogenase E1 component. | Succinate dehydrogenase subunit A. | 0.976 |
Tfu_0566 | Tfu_2590 | 2-oxoglutarate dehydrogenase E1 component. | Aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family. | 0.868 |
Tfu_0566 | Tfu_2674 | 2-oxoglutarate dehydrogenase E1 component. | 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit. | 0.944 |
Tfu_0566 | Tfu_2949 | 2-oxoglutarate dehydrogenase E1 component. | Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.868 |
Tfu_0686 | Tfu_0690 | Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.920 |
Tfu_0686 | Tfu_2590 | Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family. | 0.925 |
Tfu_0686 | Tfu_2949 | Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.925 |
Tfu_0690 | Tfu_0686 | 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.920 |
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